Locus 7217

Sequence ID 3R_DroMel_CAF1
Location 18,993,995 – 18,994,103
Length 108
Max. P 0.847249
window11681

overview

Window 1

Location 18,993,995 – 18,994,103
Length 108
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 78.39
Mean single sequence MFE -24.72
Consensus MFE -13.80
Energy contribution -14.12
Covariance contribution 0.32
Combinations/Pair 1.14
Mean z-score -2.05
Structure conservation index 0.56
SVM decision value 0.77
SVM RNA-class probability 0.847249
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18993995 108 + 27905053
UAAAACGGGCAACGCGCACUCGAGCGCCAAGUCAAUUUGCGAACGCCGCUCGUUCACAACGGUGGCGCAAAAAACAAAAGCAAAGCAAUAAUAAUUUAAAUAAAA-ACA
.......(((...((((......))))...)))...((((....(((((.(((.....))))))))((...........))...)))).................-... ( -24.70)
>DroVir_CAF1 20911 94 + 1
UAAAACUGGCAACGCGCACUCGAGCGCCAAGUUAAUUUGCAAACGCUGCUCAUACGCUGCGGAGGC--AAGAAGCAAAGCCAAAACGU-------------AAAGCAGC
......((((...((((......))))...(((..(((((...(((.((......)).)))...))--))).)))...))))......-------------........ ( -26.00)
>DroSec_CAF1 7664 108 + 1
UAAAACGGGCAACGCGCACUCGAGCGCCAAGUCAAUUUGCGAACGCCGCUCGCUCACAACGGUGGCGCAAAAAUCAAAAGCAAAGCAAUAAUAAUUUGAAUAAAA-ACA
.......(....)((((......))))(((((....((((....(((((.((.......)))))))((...........))...)))).....))))).......-... ( -23.90)
>DroSim_CAF1 7658 108 + 1
UAAAACGGGCAACGCGCACUCGAGCGCCAAGUCAAUUUGCGAACGCCGCUCGCUCACAACGGUGGCGCAAAAAACAAAAGCAAAGCAAUAAUAAUUUAAAUAAAA-ACA
.......(((...((((......))))...)))...((((....(((((.((.......)))))))((...........))...)))).................-... ( -23.00)
>DroMoj_CAF1 5279 93 + 1
UAAAACUGGCAUCGCGCACUCGAGCGCCAAGUUAAUUUGCAAACGCUGCUCAUACGCUGCGGAGGC--AAGAAGCAAAGCCAAAACAC-------------ACAG-AGC
......((((...((((......))))...(((..(((((...(((.((......)).)))...))--))).)))...))))......-------------....-... ( -26.00)
>consensus
UAAAACGGGCAACGCGCACUCGAGCGCCAAGUCAAUUUGCGAACGCCGCUCGUUCACAACGGUGGCGCAAAAAACAAAAGCAAAGCAAUAAUAAUUU_AAUAAAA_ACA
.......(((...((((......))))...)))..........(((((((..........))))))).......................................... (-13.80 = -14.12 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:27 2006