Locus 7213

Sequence ID 3R_DroMel_CAF1
Location 18,976,764 – 18,976,884
Length 120
Max. P 0.726130
window11673

overview

Window 3

Location 18,976,764 – 18,976,884
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 97.33
Mean single sequence MFE -23.23
Consensus MFE -22.12
Energy contribution -22.24
Covariance contribution 0.12
Combinations/Pair 1.08
Mean z-score -1.22
Structure conservation index 0.95
SVM decision value 0.41
SVM RNA-class probability 0.726130
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18976764 120 + 27905053
UUAAACCUUCAGUUACAGUUUUCUACAAUUUGUUAAUUUAUUAUGAAUUAACUAGUUGAAACAAUUGGUAGCAAACAUUUGUUCUUAGUUCUAGAUCUAGAGAAGUAAUUGCCUUUGCUU
.........(((((((..((((((((((((.((((((((.....)))))))).))))).(((((.((........)).)))))..............))))))))))))))......... ( -22.50)
>DroSec_CAF1 87771 120 + 1
UUAAACCUUCAGUUACAGUUUUCUACAAUUUGGUAAUUUAUUAUGAAUUAACUAGUUGAAACAAUUGGUAGCAAACAUUUGUUCUUAGUUCUAGAGCUAGAGAAGUAAUUGCCUUUGCUU
.........(((((((.((((.((((...(((.(((((..(((.....)))..)))))...)))...)))).)))).....(((((((((....)))).))))))))))))......... ( -22.70)
>DroSim_CAF1 89584 120 + 1
UUAAACCUUCAGUUACAGUUUUCUACAAUUUGUUAAUUUAUUACGAAUUAACUAGUUGAAACAAUUGGUAGCAAACAUUUGUUCUUAGUUCUAGAGCUAGAGAAGUAAUUGCCUUUGCUU
.........(((((((.((((.((((.....((((((((.....))))))))((((((...)))))))))).)))).....(((((((((....)))).))))))))))))......... ( -24.20)
>DroEre_CAF1 88368 120 + 1
UUAAACCUUCAGUUACAGUUUUCUACAAUUUGUUAAUUUAUUAUGAAUUAACUAGUUGAAACAAUUGGUAGCAAAUAUUAGGUCUUAGUUCUAGAGCUAGAGAAGUAAUUGCCUUUGCUU
......((((.(((((.........(((((.((((((((.....)))))))).))))).........))))).....((((.(((.......))).)))).))))............... ( -22.47)
>DroYak_CAF1 90971 120 + 1
UUAAACCUUCAGUUACAGUUUUCUACAAUUUGUUAAUUUAUUAUAGAUUAACUAGUUGAAACAAUUGGUAGCAAACAUUUGUUCUUAGUUCUAGAGCUAGAGAAGUAAUUGCCUUUGCUU
.........(((((((.((((.((((.....(((((((((...)))))))))((((((...)))))))))).)))).....(((((((((....)))).))))))))))))......... ( -24.30)
>consensus
UUAAACCUUCAGUUACAGUUUUCUACAAUUUGUUAAUUUAUUAUGAAUUAACUAGUUGAAACAAUUGGUAGCAAACAUUUGUUCUUAGUUCUAGAGCUAGAGAAGUAAUUGCCUUUGCUU
.........(((((((.((((.((((.....((((((((.....))))))))((((((...)))))))))).)))).....(((((((((....)))).))))))))))))......... (-22.12 = -22.24 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:19 2006