| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,974,982 – 18,975,093 |
| Length | 111 |
| Max. P | 0.831350 |
| Location | 18,974,982 – 18,975,093 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.09 |
| Mean single sequence MFE | -34.33 |
| Consensus MFE | -21.81 |
| Energy contribution | -23.00 |
| Covariance contribution | 1.19 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.831350 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18974982 111 + 27905053 UU--UUGAAGAAAAGCUG------AUCGAAUGGGUUGAUUGGUUUUUUUUUAUCAGUGCAAGGGCAGGGCAG-GCAGGCAGCCGGGGCAUUGUCGGCUUGCUUAGCUAUCACUGAACGAU ..--.(((((((((((..------(((((.....)))))..)))))))))))((((((....(((..(((((-((.((((((....))..)))).)))))))..)))..))))))..... ( -46.60) >DroSec_CAF1 86014 114 + 1 UU--UUGAAGAGAAGCUGCUUGAAAUCGAAUGGCUUGAUUGAUUU---UUUAUCAGUGCAAGGGCAGGGCAG-GCAGGCAGCCGGGGCAUUGUCGGCUUGCUUAGCUAUCACUGAACGAU ..--........(((((..(((....)))..))))).........---....((((((....(((..(((((-((.((((((....))..)))).)))))))..)))..))))))..... ( -38.20) >DroSim_CAF1 87814 114 + 1 UU--UUGAAGAGAAGCCGCUUGAAAUCGAAUGCGUUGAUUGAUUU---UUUAUCAGUGCAAGGGCAGGGCAG-GCAGGCAGCCGGGGCAUUGUCGGCUUGCUUAGCUAUCACUGAACGAU ..--............((...((((((((.........)))))))---)...((((((....(((..(((((-((.((((((....))..)))).)))))))..)))..)))))).)).. ( -34.10) >DroEre_CAF1 86639 112 + 1 UU--UUAUAGAAGAGCUGAAUGAAUUCGAAUUGG-GAAGUGAUUU---UUUAUCAGUGCAAGGGCAGGGCAG-GCAGGCAGCCG-GGCAUUGUCGGCUUGCUUAGCUAUCACUGAACGAU ..--...(((((((.((.(((........))).)-)......)))---))))((((((....(((..(((((-((.(((((...-....))))).)))))))..)))..))))))..... ( -31.90) >DroYak_CAF1 89180 113 + 1 UU--UUUUAGAAAAGCUGAAUGCAUUUAAAUGGG-GAAGUGAUUU---UUGAUCAGUGCAAGGGCAGGGCAG-GCAGGCAGCCGGGGCAUUGUCGGCUUGCUUAGCUAUCACUGAACGAU ..--..(((((((.(((...(.(((....))).)-..)))..)))---))))((((((....(((..(((((-((.((((((....))..)))).)))))))..)))..))))))..... ( -36.80) >DroAna_CAF1 88613 96 + 1 UUUCUUUUAAAAAAUA----------UAAAAACU-GUCCCCAUUU---UUGUU----------GCAGUGCAGAACAGACAGCCUGGGCAUUGUCGGCUUGCUUAGCUAUCACUGAACGAU ................----------........-..........---(((((----------.(((((.......((((((....))..))))((((.....))))..)))))))))). ( -18.40) >consensus UU__UUGAAGAAAAGCUG__UGAAAUCGAAUGGG_GGAUUGAUUU___UUUAUCAGUGCAAGGGCAGGGCAG_GCAGGCAGCCGGGGCAUUGUCGGCUUGCUUAGCUAUCACUGAACGAU ....................................................((((((....(((.((((((.((.((((((....))..)))).)))))))).)))..))))))..... (-21.81 = -23.00 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:16 2006