Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,563,188 – 2,563,287 |
Length | 99 |
Max. P | 0.880644 |
Location | 2,563,188 – 2,563,287 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 71.45 |
Mean single sequence MFE | -29.47 |
Consensus MFE | -16.25 |
Energy contribution | -17.37 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.32 |
Mean z-score | -1.70 |
Structure conservation index | 0.55 |
SVM decision value | 0.91 |
SVM RNA-class probability | 0.880644 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2563188 99 + 27905053 UGGCCCUGUUUUUCUGGACGGGAA------GUGGCGAAGGCGCCGCCAUGCUGUGCCUCAUUUAAUGCAA-GGUAAAUUGCAUUGAUUUCGUGAUUUUUUUUUUUU ....(((((((....)))))))((------((.((((((((((.((...)).)))))....(((((((((-......))))))))).))))).))))......... ( -32.90) >DroSec_CAF1 28931 78 + 1 UGGUCCUGUUUUUCUGGACGGGAA------GUGGCGAAGGCGCCGCCAUGCUGCGCCUCAUUUGAUGCAA-GGUAAAUUGCAUUG--------------------- ...((((((((....)))))))).------.....((.(((((.((...)).)))))))....(((((((-......))))))).--------------------- ( -28.40) >DroSim_CAF1 29174 78 + 1 UGGCCCUGUUUUUCUGGACGGGAA------GUGGCGAAGGCGCCGCCAUGCUGCGCCUCAUUUGAUGCAA-GGUAAAUUGCAUUG--------------------- .((((((((((....)))))))..------((((((....))))))........)))......(((((((-......))))))).--------------------- ( -28.50) >DroYak_CAF1 29465 78 + 1 UGGCCCUGUCUUUCUGGACGGGAA------GUGGCGAAGGCGCCGCCAUGCUGCGCCCCAUUUGAUGCAA-GGUAAAUUGCAUUG--------------------- ....(((((((....)))))))((------((((....(((((.((...)).)))))))))))(((((((-......))))))).--------------------- ( -32.20) >DroMoj_CAF1 37747 91 + 1 UGGAACUGGACUUGGGGACGGGAGAAGGCUGUGGCUAUGGCG-------GCGGCG--CCGUUCGAUGCUAGGCUAAAUUGCACUGAUUUUUUGAUUAAUG------ ..((((.((.((((....)))).....(((((.((....)).-------))))).--)))))).....(((((......)).)))...............------ ( -25.90) >DroAna_CAF1 26309 91 + 1 UGGGU--UCUCCUCCGGACGGGAA------GUUGCGAAGGCGCCGCCAUGCUGCGCCUCAUUUGAUGCAA-GGUAAAUUGCAUUGAUUUCUUGAUUAAUG------ .(((.--.....)))...((((((------(((..((.(((((.((...)).)))))))....(((((((-......)))))))))))))))).......------ ( -28.90) >consensus UGGCCCUGUUUUUCUGGACGGGAA______GUGGCGAAGGCGCCGCCAUGCUGCGCCUCAUUUGAUGCAA_GGUAAAUUGCAUUG_____________________ (((.(((((((....)))))))................(((((.((...)).))))))))..((((((((.......))))))))..................... (-16.25 = -17.37 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:11 2006