Locus 7208

Sequence ID 3R_DroMel_CAF1
Location 18,973,068 – 18,973,166
Length 98
Max. P 0.654011
window11663

overview

Window 3

Location 18,973,068 – 18,973,166
Length 98
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 95.24
Mean single sequence MFE -24.92
Consensus MFE -20.60
Energy contribution -20.56
Covariance contribution -0.04
Combinations/Pair 1.13
Mean z-score -1.49
Structure conservation index 0.83
SVM decision value 0.25
SVM RNA-class probability 0.654011
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18973068 98 - 27905053
UGCAAUUUUCUAAGACCCCUUAAGCACUUGAGAAGGAACAGCUUU-CGAUGUUUCACCUAUGAUGGUGUUUUACGUGCUGUUGCUGGUCAUCAACUUUC
.............((((.(((((....))))).((.((((((...-((.((...((((......))))...)))).)))))).)))))).......... ( -26.00)
>DroSec_CAF1 84126 98 - 1
UGCAAUUUUCUAAGACCCCUUAAGCACUUGAGAAGGAACAGCUUU-CGAUGUUUCACCUAUGAUGGUGUUUUACGUGCUGUUGCUGGUCAUCAACUUUC
.............((((.(((((....))))).((.((((((...-((.((...((((......))))...)))).)))))).)))))).......... ( -26.00)
>DroSim_CAF1 85910 98 - 1
UGCAAUUUUCUAAGACCCCUUAAGCACUUGAGAAGGAACAGCUUU-CGAUGUUUCACCUAUGAUGGUGUUUUACGUGCUGUUGCUGGUCAUCAACUUUC
.............((((.(((((....))))).((.((((((...-((.((...((((......))))...)))).)))))).)))))).......... ( -26.00)
>DroEre_CAF1 84682 99 - 1
UGCAAUUUUCUAAGACCCUAAAAGCACUUGAGGUGGAGUAGCUUUCCGAUGUUUCACCUAUGAUGGUGUUUUACGCGCUGUUGCUGGUCAUCAACUUUC
.............((((...((((((((..((((((((((.........)))))))))).....))))))))....((....)).)))).......... ( -23.30)
>DroYak_CAF1 87259 99 - 1
UGCAAUUUUCUAAGACCCUAAAAGCACUUGAGUAGGAACAGCUUUCCGAUGUUUCACCUAUGAUGGUGUUUUACGUGCUGUUGCUGGUCAUCAACUUUC
....................((((....(((.(((.((((((....((.((...((((......))))...)))).)))))).))).)))....)))). ( -23.30)
>consensus
UGCAAUUUUCUAAGACCCCUUAAGCACUUGAGAAGGAACAGCUUU_CGAUGUUUCACCUAUGAUGGUGUUUUACGUGCUGUUGCUGGUCAUCAACUUUC
.............((((.....(((((.(((((.((((((.........))))))(((......))).))))).)))))......)))).......... (-20.60 = -20.56 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:10 2006