Locus 7203

Sequence ID 3R_DroMel_CAF1
Location 18,968,626 – 18,968,737
Length 111
Max. P 0.951647
window11654

overview

Window 4

Location 18,968,626 – 18,968,737
Length 111
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 90.61
Mean single sequence MFE -29.53
Consensus MFE -24.30
Energy contribution -25.86
Covariance contribution 1.56
Combinations/Pair 1.03
Mean z-score -1.94
Structure conservation index 0.82
SVM decision value 1.41
SVM RNA-class probability 0.951647
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18968626 111 - 27905053
GAGAUUUCCCAGUUGUGGGGAAUUUUAUAUUAGCCAAAGUCAACAGAGAUAAA--ACUGGAAAUUUAUUGAUUUCCAGAGUGCGGCAUCAAUCCGCAACUUAGUUAUUUGCUG
(((((((((((....)))))))))))....((((.(((...(((.(((.....--.(((((((((....)))))))))..(((((.......))))).))).))).))))))) ( -34.40)
>DroSec_CAF1 79692 111 - 1
GAGAUUUCCCAGUUGUGGGGAAUUCUAUAUUAGCCAAAGUCAACAGAGAUAAA--ACUGGAAAUUUAUUGAUUUCCAGAGAGCUGCAUCAAUCCGCAACUUAGUUAUUUGCAG
.((((((((((....))))))).)))......((.(((...(((.........--.(((((((((....))))))))).(((.(((........))).))).))).))))).. ( -27.30)
>DroSim_CAF1 81480 111 - 1
GAGAUUUCCCAGUUGUGGGGAAUUCUAUAUUAGCCAAAGUCAACAGAGAUAAA--ACUGGAAAUUUAUUGAUUUCCAGAGAGCGGCAUCAAUCCGCAACUUAGUUAUUUGCUG
.((((((((((....))))))).)))....((((.(((...(((.(((.....--.(((((((((....)))))))))...((((.......))))..))).))).))))))) ( -31.60)
>DroEre_CAF1 80137 112 - 1
GAGAUUUCCCAGCACGG-GGAAUUUUCAAUUAGCAAAAGUCAACAGAGAUUGAGCACUCGAAAUUUAUUGAUCUACAGAGAGCGGCAUCAAAUCGCAACUUAGUUGUUUGCUG
((((.(((((......)-)))).))))...(((((((...((((.(((.....((.(((..................))).)).((........))..))).))))))))))) ( -27.07)
>DroYak_CAF1 82666 111 - 1
GAGAUUUCCCAGUUCGGGGGAAUUUUGUAUUAGCCAAAGUCAACAGAGAUAGA--ACUGGAAAUUUAUUGAUCUCCAGAGAGCGGCAUCAAAUCGCAACUUAGUUAUUUGCUG
((((((((((......))))))))))....((((.(((...(((.(((.....--.(((((.(((....))).)))))...((((.......))))..))).))).))))))) ( -27.30)
>consensus
GAGAUUUCCCAGUUGUGGGGAAUUUUAUAUUAGCCAAAGUCAACAGAGAUAAA__ACUGGAAAUUUAUUGAUUUCCAGAGAGCGGCAUCAAUCCGCAACUUAGUUAUUUGCUG
((((((((((......))))))))))....((((.(((...(((.(((........(((((((((....)))))))))...((((.......))))..))).))).))))))) (-24.30 = -25.86 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:01 2006