Locus 7202

Sequence ID 3R_DroMel_CAF1
Location 18,967,915 – 18,968,008
Length 93
Max. P 0.590490
window11653

overview

Window 3

Location 18,967,915 – 18,968,008
Length 93
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 83.33
Mean single sequence MFE -17.65
Consensus MFE -10.04
Energy contribution -10.00
Covariance contribution -0.04
Combinations/Pair 1.08
Mean z-score -2.11
Structure conservation index 0.57
SVM decision value 0.11
SVM RNA-class probability 0.590490
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18967915 93 - 27905053
--CCA-GC-AACGCACACUAUCACACAUCCAAUUGGCAACAGGCACACACUUUCAUCCAUGGCCAUAAUGG-------ACCGCAGCACACUAUGCCA---AUGCCAU
--...-..-........................(((((...((((..........(((((.......))))-------)....((....)).)))).---.))))). ( -15.50)
>DroSec_CAF1 78974 96 - 1
--CCA-GC-AACGCACACCAUCACACAUCCAAUUGGCAACAGGCACACACUUUCAUCCCUGGCCAUAAUGG-------ACCGCAGCACACUAUGCCAUGCAAGCCAU
--...-..-...((.............((((..((((..((((..............))))))))...)))-------)..((((((.....)))..)))..))... ( -18.44)
>DroSim_CAF1 80762 96 - 1
--CCA-GC-AACGCACACCAUCACACAUCCAAUUGGCAACAGGCACACACUUUCAUCCAUGGCCAUAAUGG-------ACCGCAGCACACUAUGCCAUGCAUGCCAU
--...-..-........................((....))((((..........(((((.......))))-------)..((((((.....)))..))).)))).. ( -17.20)
>DroEre_CAF1 79425 92 - 1
--GCA-ACAAACGCACACCAGC--ACAUCCAAUUGGCAACAGGCACACACUUUCAUCCAUGGCCGUAAUGG-------ACCACACCACUCCAUACCC---UUGCCAU
--...-......((......))--.........((((((..(((.((............)))))(((.(((-------(.........)))))))..---)))))). ( -16.20)
>DroYak_CAF1 81917 101 - 1
AGACACACAGACGCACACCAGC--ACAUCCAAUUGGCAACAGGCACACACUUUCAUCCAUGGCCACAAUGGACCAUGGACCACUCCACUCCAUACCC----UGCCAU
............((......))--.........(((((...(.....).......(((((((((.....)).)))))))..................----))))). ( -20.90)
>consensus
__CCA_GC_AACGCACACCAUCACACAUCCAAUUGGCAACAGGCACACACUUUCAUCCAUGGCCAUAAUGG_______ACCGCAGCACACUAUGCCA___AUGCCAU
.................................(((((...(((.((............)))))....(((........)))...................))))). (-10.04 = -10.00 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:00 2006