Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,555,191 – 2,555,286 |
Length | 95 |
Max. P | 0.798465 |
Location | 2,555,191 – 2,555,286 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 71.89 |
Mean single sequence MFE | -19.93 |
Consensus MFE | -9.62 |
Energy contribution | -9.15 |
Covariance contribution | -0.47 |
Combinations/Pair | 1.29 |
Mean z-score | -1.79 |
Structure conservation index | 0.48 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.798465 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2555191 95 - 27905053 UUUUUAAUAAGAUUUCCACCCAGCUCCU---CCGUUCCCAUCCUCAUCCCCAUACCCAU----CGCCGACUGCCGGCGAAAGGUGCACUCUGUUGGAAAUGA ...........(((((((...(((....---..)))................((((..(----(((((.....))))))..))))........))))))).. ( -20.60) >DroPse_CAF1 29185 97 - 1 UUUUUAAUAAGAUUUUCCUUCAGUUU-----CCAGCCCCAUCCGCUGCUCUCUAGCCUCUCUAUAUUGUCUGCUGGCGAAAGGUGCACUCUGCUGGAAAUGA ......................((((-----(((((......((((..((.(((((..(........)...))))).))..))))......))))))))).. ( -24.50) >DroSec_CAF1 21028 98 - 1 UUUUUAAUAAGAUUUCCACCCAGCCCCUACCCCAUCCCCAUCCCCAUCCCCAUCGCCAU----CGCCGACUGUCGGCGAAAGGUGCACUCUGUUGGAAAUGA ......................................(((..(((.......((((.(----(((((.....))))))..))))........)))..))). ( -19.56) >DroSim_CAF1 21251 86 - 1 UUUUUAAUAAGAUUUCCACCCAGCCCCUACCACAUCCCCAUCCCC------------AU----CGCCGACUGCCGGCGAAAGGUGCACUCUGUUGGAAAUGA ...........(((((((..(((....((((..((....))....------------.(----(((((.....))))))..))))....))).))))))).. ( -19.20) >DroEre_CAF1 22631 74 - 1 UUUUUAAUAAGAUUUCCACCCAGCCC------------------------CACACCCAU----UCCCGACUGCCGGCGAAAGGUGCACUCUGUUGGAAAUGA ...........(((((((..(((...------------------------..((((..(----(((((.....))).))).))))....))).))))))).. ( -18.70) >DroYak_CAF1 21349 74 - 1 UUUUUAAUAAGAUUUCCACCCAGCCC------------------------CACACCCAU----CCUCGACUGUCGGCGAAAGGUGCACUCUGUUGGAAAUGA ...........(((((((..(((...------------------------..((((..(----(.(((.....))).))..))))....))).))))))).. ( -17.00) >consensus UUUUUAAUAAGAUUUCCACCCAGCCC_____CCAUCCCCAUCC_C_____CAUACCCAU____CGCCGACUGCCGGCGAAAGGUGCACUCUGUUGGAAAUGA ...........(((((((..(((..........................................(((.....)))(....).......))).))))))).. ( -9.62 = -9.15 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:10 2006