Locus 7198

Sequence ID 3R_DroMel_CAF1
Location 18,965,198 – 18,965,318
Length 120
Max. P 0.750127
window11648

overview

Window 8

Location 18,965,198 – 18,965,318
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 78.70
Mean single sequence MFE -22.76
Consensus MFE -15.29
Energy contribution -15.65
Covariance contribution 0.36
Combinations/Pair 1.24
Mean z-score -1.46
Structure conservation index 0.67
SVM decision value 0.47
SVM RNA-class probability 0.750127
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18965198 120 + 27905053
CCCACCGCCACCCACUCCACUUUCACUACCCCCGCCCCUUUUUUUUUAUGGCGAUAAGAUACUGCUGUUCUUCGCCUUAGCUGGUAUCUUAGCACACAUUUUGUUCUGGCACCGAUAUAG
......((((......................((((.............)))).(((((((((((((..........)))).)))))))))...............)))).......... ( -23.52)
>DroSec_CAF1 76546 118 + 1
CCCACCGCCACCCACUCCACUUUCACUGCCCCUGCCCCUUU--UUUUAUGGCGAUAAGAUACUGCUGUUCUUCGCCUUAGCUGGUAUCUUAGCACACAUUUUGUUCUGGCACCGAUAUAG
......((((.................((...((((.....--......)))).(((((((((((((..........)))).)))))))))))(((.....)))..)))).......... ( -22.00)
>DroSim_CAF1 78151 118 + 1
CCCACCGCCACCCACUCCACUUUCACUGCCCCUGCCCCUUU--UUUUAUGGCGAUAAGAUACUGCUGUUCUUCGCCGUAGCUGGUGUCUUAGCACACAUUUUGUUAUGGCACCGAUACAG
.........................(((.............--..(((((((((..(((.((....)))))))))))))).(((((((.(((((.......))))).)))))))...))) ( -26.90)
>DroEre_CAF1 76787 101 + 1
-------------ACUCCACUUUCACUGCCCCUGCCUCUUC----CAGUGGCGAUAAGAUACUGCUAUUCUUCGCCUUAGCUGGUGUCUUAACACACAUUUU--GCCGGCACCGAUAUAG
-------------.........((..((((...(((.(...----..).)))(.(((((((((((((..........)))).))))))))).).........--...))))..))..... ( -24.00)
>DroYak_CAF1 79207 114 + 1
CCCACCGCCACCCACUCCACUUUCACUGCCCCUGCCCCUUU----UUGUGGCGAUAAGAUACCGCUAUUCAUCGCCAUAGCUGGUGUCUUAGCACACAUUUU--UCUGCCACCGAUGUAG
.....((((((..............................----..)))))).((((((((((((((........))))).)))))))))....(((((..--.........))))).. ( -24.75)
>DroAna_CAF1 78774 111 + 1
----CCCCAGCUCUCCCCACUUUCCCCAAAA-CACCUCUU---GAGCCAGACGAUAAGAUAUUGCUAGUAUUCGACUUAGCUGGUGUCUUAGAACACAUUUU-UUCUGCAACCCAUAAAA
----.....((((..................-........---))))((((.(((((((((((((((((.....)).)))).))))))))).........))-.))))............ ( -15.37)
>consensus
CCCACCGCCACCCACUCCACUUUCACUGCCCCUGCCCCUUU__UUUUAUGGCGAUAAGAUACUGCUAUUCUUCGCCUUAGCUGGUGUCUUAGCACACAUUUU_UUCUGGCACCGAUAUAG
..........................((((..((((.............)))).(((((((((((((..........)))).)))))))))................))))......... (-15.29 = -15.65 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:55 2006