Locus 7197

Sequence ID 3R_DroMel_CAF1
Location 18,964,824 – 18,964,926
Length 102
Max. P 0.523836
window11647

overview

Window 7

Location 18,964,824 – 18,964,926
Length 102
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.47
Mean single sequence MFE -26.15
Consensus MFE -14.70
Energy contribution -15.93
Covariance contribution 1.22
Combinations/Pair 1.16
Mean z-score -2.00
Structure conservation index 0.56
SVM decision value -0.02
SVM RNA-class probability 0.523836
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18964824 102 - 27905053
-CUU--GUUAUUGAUUAG-CGCCAUAAACGAGCUAUUG-GGCUUUUAUGGCGGACUUCCAGUUUCCUUGGA---CGAUUUGGUG----------CUAUUGAACAACAAACUAAUAAUCAG
-.((--(((.((.(.(((-((((((((..(((((....-))))))))))))...(.(((((.....)))))---.).......)----------))).).)).)))))............ ( -26.60)
>DroSec_CAF1 76174 103 - 1
-CUU--GUUAUUGAUUAG-CGCCAUAAACGAGCUAUUAUGGCUUUUAUGGCGGACUUCCAUUUUCAUUGGC---CGAUUUGGUG----------CUAUUGAACAACAAACCAAUAAUCAG
-((.--(((((((.....-((((((((..(((((.....)))))))))))))..........((((.((((---(......).)----------))).))))........))))))).)) ( -27.50)
>DroSim_CAF1 77760 103 - 1
-CUU--GUUAUUGAUUAG-CGCCAUAAACGAGCUAUUAUGGCUUUUAUGGCGGACUUCCAUUUUCCUUGGC---CGAUUUGGUG----------CUAUUGAACAACAAACCAAUAAUCAG
-.((--(((.((.(.(((-(((((....((.((((.....(((.....)))((....))........))))---))...)))))----------))).).)).)))))............ ( -26.60)
>DroEre_CAF1 76394 112 - 1
-CUU--GUUAUUGAUUAG-CGCCAUAAACGAGCUAUUA-GGCUUUUAUGGCGGACUUCCAUUUUCCUUGGC---CGAUUUGGUUCUAUUUGGUUCUAUUGAACAACAGACCAAUAAUCAG
-...--.....(((((((-((((((((..(((((....-))))))))))))((....))..........))---....(((((.((.....((((....))))...))))))))))))). ( -30.20)
>DroYak_CAF1 78848 108 - 1
-CUU--GUUAUUGAUUAG-CGCCAUAAACGAGCUAUUA-GGCAUUUAUGGCGGACUUCCAUUUUCCUUGGC---CGAUUUGGUUCUACU----UCUAUUGAACAACAGACCAAUAAUCAA
-...--....((((((((-(((((((((...(((....-))).))))))))((....))..........))---....((((((....(----((....))).....))))))))))))) ( -25.30)
>DroAna_CAF1 78431 109 - 1
CCCUCCCUCCUUGAUAAGUCCCCAUAAAGGGGCUAUUA-AA-GUUUACGGCCGACUUCCACUUUCCUAGUCCUCCAAUUCGGAG---CU----UAUAUUUUACGA--AAUAAAUAAUCAA
......((((((((((.(((((......))))))))))-).-......((..((((...........))))..)).....))))---..----............--............. ( -20.70)
>consensus
_CUU__GUUAUUGAUUAG_CGCCAUAAACGAGCUAUUA_GGCUUUUAUGGCGGACUUCCAUUUUCCUUGGC___CGAUUUGGUG__________CUAUUGAACAACAAACCAAUAAUCAG
..........(((((((..(((((((((..((((.....)))))))))))))..........................(((((.........................)))))))))))) (-14.70 = -15.93 +   1.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:54 2006