| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,963,772 – 18,963,864 |
| Length | 92 |
| Max. P | 0.545699 |
| Location | 18,963,772 – 18,963,864 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 92.05 |
| Mean single sequence MFE | -25.30 |
| Consensus MFE | -21.59 |
| Energy contribution | -22.15 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.545699 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18963772 92 - 27905053 UCUGCGGUAUCUGAAGUUGAAUCUUGAAUGCCACGGGAUUAGACGAGCAGCAGAGCAGCAGAGCAGCAGAAACCGCAGCGGACAGAUGGAUA .(((((((.((((..(((.(((((((.......))))))).)))..((.((......))...))..)))).))))))).............. ( -27.00) >DroSec_CAF1 75144 84 - 1 UCUGCGGCAUCUGAAGUUGAAUCUUGAAUGCCACGGGAUUAGACGAGCAGCAG--------AGCAGCAGAAACCGCAGCGGACAGCUGGAUA (((((.((.((((..(((.(((((((.......))))))).)))......)))--------))).))))).....((((.....)))).... ( -27.20) >DroSim_CAF1 76748 84 - 1 UCUGCGGUAUCUGAAGUUGAAUCUUGAAUGCCACGGGAUUAGACGAGCAGCAG--------AGCAGCAGAAACCGCAGCGGACAGAUGGAUA .(((((((.((((..(((.(((((((.......))))))).)))..((.....--------.))..)))).))))))).............. ( -26.30) >DroEre_CAF1 75350 84 - 1 UCUGUGGUAUCCGAAGCUGAAUCUUGAAUGCCACGGGAUUAGACGAGCAGCAG--------AGCAGCAGAAACCGCAGCGGACAGAUGAAUA .(((((((.((....((((...(((...(((..((........)).)))...)--------)))))).)).))))))).............. ( -20.70) >consensus UCUGCGGUAUCUGAAGUUGAAUCUUGAAUGCCACGGGAUUAGACGAGCAGCAG________AGCAGCAGAAACCGCAGCGGACAGAUGGAUA .(((((((.((((..(((.(((((((.......))))))).))).....((...........))..)))).))))))).............. (-21.59 = -22.15 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:53 2006