Locus 7195

Sequence ID 3R_DroMel_CAF1
Location 18,963,645 – 18,963,761
Length 116
Max. P 0.588859
window11645

overview

Window 5

Location 18,963,645 – 18,963,761
Length 116
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 98.30
Mean single sequence MFE -24.02
Consensus MFE -22.08
Energy contribution -22.25
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.01
Structure conservation index 0.92
SVM decision value 0.11
SVM RNA-class probability 0.588859
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18963645 116 + 27905053
-GCUGCAUGCAUGUCAAUAAUCAUAUCGGAUUACC-CAUUGGCUUUGCCCUCAGCCCCAUUGUUGCUACAAUUUAUGAAAUUUUAGAACUUAUGCUGCGGCUUUUGACGCAUUCUUUU--
-((((((.(((((.(((((((......((.....)-)...((((........))))..)))))))(((.((((.....)))).)))....))))))))))).................-- ( -24.30)
>DroSec_CAF1 75017 116 + 1
-GCUGCAUGCAUGUCAAUAAUCAUAUCGGAUUACC-CAUUGGCUUUGCCCUCAGCCCCAUUGUUGCUACAAUUUAUGAAAUUUUAGAACUUAUGCUGCGGCUUUUGACGCAUUCUUUU--
-((((((.(((((.(((((((......((.....)-)...((((........))))..)))))))(((.((((.....)))).)))....))))))))))).................-- ( -24.30)
>DroSim_CAF1 76621 116 + 1
-GCUGCAUGCAUGUCAAUAAUCAUAUCGGAUUACC-CAUUGGCUUUGCCCUCAGCCCCAUUGUUGCUACAAUUUAUGAAAUUUUAGAACUUAUGCUGCGGCUUUUGACGCAUUCUUUU--
-((((((.(((((.(((((((......((.....)-)...((((........))))..)))))))(((.((((.....)))).)))....))))))))))).................-- ( -24.30)
>DroEre_CAF1 75223 116 + 1
-GCUGCAUGCAUGUCAAUAAUCAUAUCGGAUUACC-CAUUGGCUUUGCCCUCAGCCCCAUUGUUGCUACAAUUUAUGAAAUUUUAGAACUUAUGCUGCGGCUUUUGACGCAUUCUUUU--
-((((((.(((((.(((((((......((.....)-)...((((........))))..)))))))(((.((((.....)))).)))....))))))))))).................-- ( -24.30)
>DroYak_CAF1 77614 116 + 1
-GCUGCAUGCAUGUCAAUAAUCAUAUCGGAUUACC-CAUUGGCUUUGCCCUCAGCCCCAUUGUUGCUACAAUUUAUGAAAUUUUAGAACUUAUGCUGCGGCUUUUGACGCAUUCUUUU--
-((((((.(((((.(((((((......((.....)-)...((((........))))..)))))))(((.((((.....)))).)))....))))))))))).................-- ( -24.30)
>DroAna_CAF1 77293 120 + 1
GACUGCAUGCAUGUCAAUAAUCAUAUCGGAUUACCCCAUUGGCUUUGCCCUCAGCCCCAUUGUUGCUACAAUUUAUGAAAUUUUAGAACUUAUGCUGCGGCUUUUGACGCAUUCUUCUCC
((.(((..(((.((((((((((......))))).....)))))..)))((.((((......(((.(((.((((.....)))).))))))....)))).))........))).))...... ( -22.60)
>consensus
_GCUGCAUGCAUGUCAAUAAUCAUAUCGGAUUACC_CAUUGGCUUUGCCCUCAGCCCCAUUGUUGCUACAAUUUAUGAAAUUUUAGAACUUAUGCUGCGGCUUUUGACGCAUUCUUUU__
.((((((.(((((....(((((......))))).......((((........)))).....(((.(((.((((.....)))).)))))).)))))))))))................... (-22.08 = -22.25 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:52 2006