Locus 7193

Sequence ID 3R_DroMel_CAF1
Location 18,960,555 – 18,960,675
Length 120
Max. P 0.999561
window11642

overview

Window 2

Location 18,960,555 – 18,960,675
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 97.83
Mean single sequence MFE -31.49
Consensus MFE -30.98
Energy contribution -31.34
Covariance contribution 0.36
Combinations/Pair 1.04
Mean z-score -1.94
Structure conservation index 0.98
SVM decision value 3.72
SVM RNA-class probability 0.999561
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18960555 120 - 27905053
UUAUUUACACUUGACGCUGUUGUCUAACGGCCACUUACAAGGCACACACAUUAUUUAGCCAUCUUUUUGGGCCGCCGACGCCGUGUAUACGUAAAUGUUUACCUUACGCACCCGUCGGCA
............((((....))))....((((........(((..............))).........))))(((((((..(((((...((((....))))..)))))...))))))). ( -32.67)
>DroSec_CAF1 71965 120 - 1
UUAUUUACACUUGACGCUGUUGUCUAACGGCCACUUACAAGGCACACACAUUAUUUAGCCAUCUUUUUGGGCCGCCGACGCCGUGUAUCCGUAAAUGUUUACCUUACGCACCCGUCGGCA
............((((....))))....((((........(((..............))).........))))(((((((..(((((...((((....))))..)))))...))))))). ( -32.67)
>DroSim_CAF1 73575 120 - 1
UUAUUUACACUUGACGCUGUUGUCUAACGGCCACUUACAAGGCACACACAUUAUUUAGCCAUCUUUUUGGGCCGCCGACGCCGUGUAUCCGUAAAUGUUUACCUUACGCACCCGUCGGCA
............((((....))))....((((........(((..............))).........))))(((((((..(((((...((((....))))..)))))...))))))). ( -32.67)
>DroEre_CAF1 72147 120 - 1
UUAUUUACACUUGACGCUGUUGUCUAACGGCCACUUACAAGGCACACACAUUAUUUAGCCAUCUUUUUGGGCCGCCGACGCCGUGUAUCCGUAAAUGUUUACCUUACGCACCCGUCGGCA
............((((....))))....((((........(((..............))).........))))(((((((..(((((...((((....))))..)))))...))))))). ( -32.67)
>DroYak_CAF1 74382 120 - 1
UUAUUUACACUUGACGCUGUUGUCUAACGGCCACUUACAAGGCACACACAUUAUUUAGCCAUCUUUUUGGGCCGCCGACGCCGUGUAUCCGUAAAUGUUUACCUUACGCACCCGUCGGCA
............((((....))))....((((........(((..............))).........))))(((((((..(((((...((((....))))..)))))...))))))). ( -32.67)
>DroAna_CAF1 74164 116 - 1
UUAUUUACACUUGACGCUGUUGUCUAACGGCCACUUACAAGGCACACACAUUAUUUAGCCAUCUUUUUGGGCCGCCGACGCCGCCU----CUAAAUGUUUACCUUACGCACCCGUCGGCA
............((((....))))....((((........(((..............))).........))))(((((((..((..----.................))...))))))). ( -25.58)
>consensus
UUAUUUACACUUGACGCUGUUGUCUAACGGCCACUUACAAGGCACACACAUUAUUUAGCCAUCUUUUUGGGCCGCCGACGCCGUGUAUCCGUAAAUGUUUACCUUACGCACCCGUCGGCA
............((((....))))....((((........(((..............))).........))))(((((((..(((((...((((....))))..)))))...))))))). (-30.98 = -31.34 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:49 2006