Locus 7191

Sequence ID	3R_DroMel_CAF1
Location	18,960,168 – 18,960,261
Length	93
Max. P	0.890613

overview

Window 7

Location	18,960,168 – 18,960,261
Length	93
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	98.71
Mean single sequence MFE	-24.90
Consensus MFE	-23.08
Energy contribution	-23.32
Covariance contribution	0.24
Combinations/Pair	1.04
Mean z-score	-1.57
Structure conservation index	0.93
SVM decision value	0.96
SVM RNA-class probability	0.890613
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18960168 93 + 27905053
AACGCGCUGCAACUUUGCUUUAUUAAAAGGCUUAACCAGUCGAGAGUUGAGACUUAAGAGGCGAGAGCCAAGUCGUGCUAAUGAGCACAAAAG
(((.(((((.......(((((.....))))).....))).))...)))..(((((....(((....))))))))(((((....)))))..... ( -25.40)
>DroSec_CAF1 71583 93 + 1
AACGCGCUGCAACUUUGCUUUAUUAAAAGGCUUAACCAGUCGAGAGUUGAGACUUAAGAGGCGAGAGCCAAGUCGUGCUAAUGAACACAAAAG
...((((..((((((((((((.....)))))...........))))))).(((((....(((....))))))))))))............... ( -23.30)
>DroSim_CAF1 73182 93 + 1
AACGCGCUGCAACUUUGCUUUAUUAAAAGGCUUAACCAGUCGAGAGUUGAGACUUAAGAGGCGAGAGCCAAGUCGUGCUAAUGAGCACAAAAG
(((.(((((.......(((((.....))))).....))).))...)))..(((((....(((....))))))))(((((....)))))..... ( -25.40)
>DroEre_CAF1 71748 93 + 1
AACGCGCUGCAACUUUGCUUUAUUAAAAGGCUUAACCAGUCGAGAGUUGAGACUUAAGAGGCGAGAGCCAGGUCGUGCUAAUGAGCACAAAAG
(((.(((((.......(((((.....))))).....))).))...)))..(((((....(((....))))))))(((((....)))))..... ( -25.10)
>DroYak_CAF1 73961 93 + 1
AACGCGCUGCAACUUUGCUUUAUUAAAAGGCUUAACCAGUCGAGAGUUGAGACUUAAGAGGCGAGAGCCAAGCCGUGCUAAUGAGCACAAAAG
........(((....)))..........(((((....((((.........)))).....(((....))))))))(((((....)))))..... ( -25.30)
>consensus
AACGCGCUGCAACUUUGCUUUAUUAAAAGGCUUAACCAGUCGAGAGUUGAGACUUAAGAGGCGAGAGCCAAGUCGUGCUAAUGAGCACAAAAG
(((.(((((.......(((((.....))))).....))).))...)))..(((((....(((....))))))))(((((....)))))..... (-23.08 = -23.32 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:45 2006