Locus 719

Sequence ID 3R_DroMel_CAF1
Location 2,553,920 – 2,554,021
Length 101
Max. P 0.599618
window1137

overview

Window 7

Location 2,553,920 – 2,554,021
Length 101
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 76.71
Mean single sequence MFE -24.43
Consensus MFE -12.45
Energy contribution -12.87
Covariance contribution 0.42
Combinations/Pair 1.16
Mean z-score -1.80
Structure conservation index 0.51
SVM decision value 0.13
SVM RNA-class probability 0.599618
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2553920 101 - 27905053
AGCUUCU---CAUCAGCUGCA---UAUAGAAAUGG--GAAUGCUCACUGAUUAUCAAACGAAAAUAUUUGCUAAUCACGCAGCUGCUGCC-GCUGC--ACG-AAAAUAUCAA-A
.((....---((.(((((((.---........(((--(....)))).((((((.((((........)))).)))))).))))))).))..-...))--...-..........-. ( -23.60)
>DroVir_CAF1 23428 108 - 1
GGCUU-U---GGCCAGCUGCAAUAAAUAUAAAUACAUUCAUAUUUACUUAUUAUCUAUUC-GAAUACUUGCUAAUCACGCAGCUGCUGCCCGUUGCUGGCG-AAAAUCUCAAUA
(..((-(---.((((((.((..(((((((.((....)).)))))))..............-.................((((...))))..)).)))))).-)))..)...... ( -21.70)
>DroGri_CAF1 22681 106 - 1
AGUCU-G---GGGUAGCUGCAGUAAAUAUAAAUAC--UCAUAUUUUCUUAUUAUCUAUUG-AAAUAGUUGCUAAUCACGCAGCUGUUGCCCGUUGCUGGCA-AAAAUCUCAAUA
....(-(---((((((((((((((........)))--)..((((((..((.....))..)-)))))............)))))).(((((.......))))-)..))))))... ( -21.80)
>DroEre_CAF1 21279 100 - 1
AGCUUCG---CAUCAGCUGCA---UAUAGAAAUGG--GAAUGCUCGCUGAUUAUCAAACGAAAAUAUUUGCUAAUCACGCAGCUGCCGCC-GCUGC--ACG-A-AAUAUCAA-A
...((((---...((((.((.---..((....))(--(...(((.((((((((.((((........)))).)))))).)))))..)))).-)))).--.))-)-).......-. ( -26.00)
>DroYak_CAF1 20009 101 - 1
AGCUUCG---CAUCAGCUGCA---UAUAGAAAUGG--GAAUGCUCGCUGAUUAUCAAACGAAAAUAUUUGCUAAUCACGCAGCUGCUUCC-GCUGC--ACG-AAAAUAUCAA-A
...((((---...((((..((---(......)))(--(((.(((.((((((((.((((........)))).)))))).)))))...))))-)))).--.))-))........-. ( -24.30)
>DroAna_CAF1 17976 105 - 1
AGCUUGGCUACAGCAGCUGCA---UGUAGAAAUGG--GAAUGUUCGCUGAUUAUCAAACAAAAAUAUUUGCUAAUCACGCAGAUGCUGCU-GCUGA--ACGGAAAGUAUCAA-A
.((((..((.(((((((.(((---(.(.(((((..--..)).)))((((((((.((((........)))).)))))).))).)))).)))-)))).--..)).)))).....-. ( -29.20)
>consensus
AGCUUCG___CAUCAGCUGCA___UAUAGAAAUGG__GAAUGCUCGCUGAUUAUCAAACGAAAAUAUUUGCUAAUCACGCAGCUGCUGCC_GCUGC__ACG_AAAAUAUCAA_A
.............(((((((......((....)).............((((((.((((........)))).)))))).)))))))............................. (-12.45 = -12.87 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:09 2006