Locus 7189

Sequence ID 3R_DroMel_CAF1
Location 18,958,352 – 18,958,456
Length 104
Max. P 0.992110
window11634

overview

Window 4

Location 18,958,352 – 18,958,456
Length 104
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 93.54
Mean single sequence MFE -27.45
Consensus MFE -27.40
Energy contribution -27.40
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.34
Structure conservation index 1.00
SVM decision value 2.31
SVM RNA-class probability 0.992110
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18958352 104 + 27905053
UUGCCAACGCCUGUCAGCUUAGCGAUCGCCAGUACGAAACAUGCGAAAUUACGCUUGUUAGUGUCACUUCUGGCUAACUGACCAGGCCCACCCAUCAGCCAGCA----------------
........(((((((((.(((((..(((......)))((((.(((......))).)))).............))))))))).))))).................---------------- ( -27.40)
>DroSec_CAF1 69766 104 + 1
UUGCCAACGCCUGUCAGCUUAGCGAUCGCCAGUACGAAACAUGCGAAAUUACGCUUGUUAGUGUCACUUCUGGCUAACUGACCAGGCCCACCCAUCACCCAGCA----------------
........(((((((((.(((((..(((......)))((((.(((......))).)))).............))))))))).))))).................---------------- ( -27.40)
>DroSim_CAF1 71380 104 + 1
UUGCCAACGCCUGUCAGCUUAGCGAUCGCCAGUAAGAAACAUGCGAAAUUACGCUUGUUAGUGUCACUUCUGGCUAACUGACCAGGCCCACCCAUCACCCAGCA----------------
........(((((((((.(((((..((((..((.....))..))))....(((((....)))))........))))))))).))))).................---------------- ( -27.40)
>DroEre_CAF1 69921 104 + 1
UUGCCAACGCCUGUCAGCUUAGCGAUCGCCAGUACGAAACAUGCGAAAUUACGCUUGUUAGUGUCACUUCUGGCUAACUGACCAGGCCCACCCAUCACCCAGCA----------------
........(((((((((.(((((..(((......)))((((.(((......))).)))).............))))))))).))))).................---------------- ( -27.40)
>DroYak_CAF1 72071 120 + 1
UUGCCAACGCCUGUCAGCUUAGCGAUCGCCAGUACGAAACAUGCGAAAUUACGCUUGUUAGUGUCACUUCUGGCUAACUGACCAGGCCCACCCAUCACCCAUCACCCAGCACCCAUUACC
........(((((((((.(((((..(((......)))((((.(((......))).)))).............))))))))).)))))................................. ( -27.40)
>DroAna_CAF1 71946 104 + 1
UUGCCAACGCCUGUCAGCUUAGCGAUCGCCAGUACGGAACAUGCGAAAUUACGCUUGUUAGUGUCACUUCUGGCUAACUGACCAGGCCCACCCAUCAGCCAUCA----------------
........(((((((((.(((((.(.....((((((.((((.(((......))).))))..))).)))..).))))))))).))))).................---------------- ( -27.70)
>consensus
UUGCCAACGCCUGUCAGCUUAGCGAUCGCCAGUACGAAACAUGCGAAAUUACGCUUGUUAGUGUCACUUCUGGCUAACUGACCAGGCCCACCCAUCACCCAGCA________________
........(((((((((.(((((..((((..((.....))..))))....(((((....)))))........))))))))).)))))................................. (-27.40 = -27.40 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:42 2006