Locus 7183

Sequence ID 3R_DroMel_CAF1
Location 18,951,450 – 18,951,570
Length 120
Max. P 0.729534
window11618

overview

Window 8

Location 18,951,450 – 18,951,570
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 92.42
Mean single sequence MFE -26.02
Consensus MFE -22.23
Energy contribution -21.99
Covariance contribution -0.24
Combinations/Pair 1.15
Mean z-score -1.37
Structure conservation index 0.85
SVM decision value 0.42
SVM RNA-class probability 0.729534
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18951450 120 + 27905053
UCUUUUCUUAUGUCCUCGCUCACCUCGUUUCGCAGGUCAUCUCUAACCUGGCUGCGCACCUCCUCGGCCAGCUCCUUGCGAACCUCACUGCGCACCUCCUCCGCUAGUUCCUUGCGCAGU
...............((((..((((((...)).))))..........(((((((.(......).)))))))......)))).....((((((((..................)))))))) ( -28.97)
>DroSec_CAF1 62773 120 + 1
UCCUUUCUUAUGUCCUCGCUCACCUCGUUUCGCAGGUCAUCCCUAACCUGGCUGCGCACCUCCUCGGCCAACUCUUUGCGAACCUCACAGCGCACCUCCUCCGCUAAUUCCUUGCGCAGU
................................(((((........)))))((((((((.......(((........((((..........))))........))).......)))))))) ( -23.93)
>DroSim_CAF1 63696 120 + 1
UCCUUUCUUAUGUCCUCGCUCACCUCGUUUCGCAGGUCAUCCCUAACCUGGCUGCGCACCUCCUCGGCCAACUCCUUGCGAACCUCACAGCGCACCUCCUCCGCUAAUUCCUUGCGCAGU
................................(((((........)))))((((((((.......(((........((((..........))))........))).......)))))))) ( -23.93)
>DroEre_CAF1 62925 120 + 1
UCCUUUCUUAUGUCCUCGCUAACCUCGCUUCGCAGGUCAUCUCUAACCUGGUUGCGCACCUCCUCGGCCAGGUCCUUGCGCACCUCACUGCGCACUUCCUCCGCUAGUUCCUUUCGCAGC
.................((.......(((.((.(((.........(((((((((.(......).)))))))))...((((((......))))))...))).))..))).......))... ( -28.14)
>DroYak_CAF1 64913 120 + 1
UCCUUUCUAAUGUCCUCGCUAACCUCGUUUCGCAGGUCGUCUCUAACCUGGUUGCGCACCUCCUCGGCCAGUUCCUUGCGCACCUCACUGCGCACUUCCUCCGCCAGUUCCUUUCGCAGC
................................(((((........)))))((((((......((.(((........((((((......))))))........))))).......)))))) ( -25.11)
>consensus
UCCUUUCUUAUGUCCUCGCUCACCUCGUUUCGCAGGUCAUCUCUAACCUGGCUGCGCACCUCCUCGGCCAGCUCCUUGCGAACCUCACUGCGCACCUCCUCCGCUAGUUCCUUGCGCAGU
................................(((((........)))))((((((((.......(((........((((..........))))........))).......)))))))) (-22.23 = -21.99 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:27 2006