Locus 7182

Sequence ID 3R_DroMel_CAF1
Location 18,943,938 – 18,944,041
Length 103
Max. P 0.588629
window11617

overview

Window 7

Location 18,943,938 – 18,944,041
Length 103
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 68.22
Mean single sequence MFE -20.87
Consensus MFE -7.00
Energy contribution -9.08
Covariance contribution 2.08
Combinations/Pair 1.48
Mean z-score -1.80
Structure conservation index 0.34
SVM decision value 0.11
SVM RNA-class probability 0.588629
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18943938 103 + 27905053
AUAAACCGUGCUGACAAUGUCAAUGUGCGUUGUUUUAUGCCUUUGAAUUGAAAUCUUCGUAACUAAUCGAGUUUUAAAACGAAAAUCAGCACAAGGAAAACAC
.....(((((((((((((.((((.(.((((......))))).)))))))).....(((((((((.....)))).....)))))..)))))))..))....... ( -23.80)
>DroSec_CAF1 55253 103 + 1
AUAAUCAGUGCUGACCAUGUCAAAGUGCGUUGUAUUAUGUUUUUGAAUUGAAAUCUUCCUAACCAGUGUGGUUUUCAAACGAAAAUCAGCACAAACAAAACAC
.......(((((((((((.((((((.((((......))))))))))((((.............))))))))(((((....))))))))))))........... ( -21.02)
>DroSim_CAF1 56192 103 + 1
AUAAUCAGUGCUGACCAUGUCAAAAAGCGUUGUUUUAUGUUUUUGAAUUGAAAUCUUCCUAACCAGUGUGGUUUUCAAACGAAAAACAGCACAAACAAAACAC
.......(((((((((((.(((((((.(((......))))))))))((((.............)))))))))((((....))))..))))))........... ( -20.72)
>DroEre_CAF1 55367 102 + 1
AUAAUCGGGGCUGUAAAAGUUGCAGUUUGUUAUUAUAUGUUUUUAAAUUAAAAUCUUUCUCAUUGACGGAA-UUUUAAUUAAAAAAUAUCACAGACAAGGUGC
........((((.....))))(((.((((((.....((((((((.(((((((((((.((.....)).)).)-)))))))).))))))))....)))))).))) ( -21.40)
>DroYak_CAF1 57367 89 + 1
ACUAUAAGUGCUGAUAGAGU-------------UAUAUGUUUUUACAUUAAAAUCUUUCUGAUAAGCAGUA-UUUUAAGUGAAAAACGGCACAGACAAAGUCC
.......(((((((((....-------------..))).(((((((.(((((((....(((.....))).)-))))))))))))).))))))........... ( -17.40)
>consensus
AUAAUCAGUGCUGACAAUGUCAAAGUGCGUUGUUUUAUGUUUUUGAAUUGAAAUCUUCCUAACCAGUGGAGUUUUCAAACGAAAAACAGCACAAACAAAACAC
.......((((((......((((((.((((......)))))))))).((((((...(((........)))..))))))........))))))........... ( -7.00 =  -9.08 +   2.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:26 2006