| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,929,720 – 18,929,832 |
| Length | 112 |
| Max. P | 0.525615 |
| Location | 18,929,720 – 18,929,832 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 84.82 |
| Mean single sequence MFE | -34.40 |
| Consensus MFE | -21.30 |
| Energy contribution | -24.62 |
| Covariance contribution | 3.32 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.62 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.525615 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18929720 112 + 27905053 CUGCAUGGGUGAAAGUGGGUUUUUGGCUGUGCAAAUGGCUCUUGGGAGUCAAGCGUCUAGUUUUGCCACACGGUCUCUUCAGCCAAAUUCCAACUUCCACUUGUGGAAAUUU ...((..((((.((((.((..((((((((.((...((((((....)))))).))..........(((....))).....))))))))..)).)))).))))..))....... ( -39.70) >DroSec_CAF1 40826 100 + 1 CUGCAUGGGUGAAAGUGGGUUUUUGG------------CUCUUGGGAGUCAAGCGUCUAGUUUUGCCACACGGUCUCUGCAGCCAAAUUCCAACUUGCACUUGUGAAAAUUU ...((..((((.((((.((..(((((------------((...((((.(...(((........))).....).))))...)))))))..)).)))).))))..))....... ( -32.00) >DroSim_CAF1 40809 99 + 1 CUGAACGGGUGAAAGUGGGUUUUUGG------------CUCUUGGGAGUCAAGCGUCUAGUUUUG-CACACGGUCUCUGCAGCCAAAUUCCAACUUGCACUUGUGGAAAUUU ....(((((((.((((.((..(((((------------((...((((.(...(((........))-)....).))))...)))))))..)).)))).)))))))........ ( -31.30) >DroEre_CAF1 40957 111 + 1 CUUCAUGGGCGAAAGUGGGUUUU-GGCUGUGCAAAUGGCUCUUGGGAGUCAAGCGUCUAGUUUUGCCACUGAGUCUCUUCAGCAAAAUUUCAGCUUGCACUUGUGGAAAUUU ........((....))(((((((-.((.((((((.((((((....)))))).((....((((((((...((((....))))))))))))...))))))))..)).))))))) ( -33.00) >DroYak_CAF1 42134 111 + 1 CUUCAGGGGUGAAAGUGGGUUUU-GGCUGUGCAAAUGGCUCUUGGGAGUCAAGCGUCUACUUUUGCCACAAAGUCUCUUUGGCAAAAUUUCCACUUGCACUUGUGAAAAUUU .((((.(((((.(((((((....-(((.((.....((((((....)))))).)))))...((((((((...........))))))))..))))))).))))).))))..... ( -36.00) >consensus CUGCAUGGGUGAAAGUGGGUUUUUGGCUGUGCAAAUGGCUCUUGGGAGUCAAGCGUCUAGUUUUGCCACACGGUCUCUUCAGCCAAAUUCCAACUUGCACUUGUGGAAAUUU ...((((((((.((((.((..((((((((......((((((....)))))).(((........))).............))))))))..)).)))).))))))))....... (-21.30 = -24.62 + 3.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:25 2006