Locus 7177

Sequence ID 3R_DroMel_CAF1
Location 18,915,153 – 18,915,251
Length 98
Max. P 0.520894
window11606

overview

Window 6

Location 18,915,153 – 18,915,251
Length 98
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 82.85
Mean single sequence MFE -20.29
Consensus MFE -15.41
Energy contribution -16.22
Covariance contribution 0.81
Combinations/Pair 1.29
Mean z-score -1.38
Structure conservation index 0.76
SVM decision value -0.02
SVM RNA-class probability 0.520894
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18915153 98 - 27905053
A-AA---UCCCCCGGCUUUAAUUUUGAUUGUUAAGCCUAGCAUUCGCAAUUCCCAUAAUUCAAUGGC--CUCGAAUGCUGUUUGCUUUGCCAAUUAAUCGCAUU
.-..---................(((((((..((((.(((((((((......((((......)))).--..)))))))))...))))...)))))))....... ( -21.40)
>DroSec_CAF1 25181 99 - 1
AAAA---UCCCCCGGCUUUAAUUUUGAUUGUUAAGCCUAGCAUUCGCAAUUCCCAUAAUUCGAUGGC--CUCGAAUGCUGUUUGCUUUGCCAAUUAAUCGCAUU
....---................(((((((..((((.(((((((((......((((......)))).--..)))))))))...))))...)))))))....... ( -21.50)
>DroSim_CAF1 26296 96 - 1
AAAA---UCCCCCGGCUUUA-UUUUGAUUGUUAAGC-UAGCAUUCGCAAUUCCCAUAAUUCGAUGGC--CUCGAAUGCUGU-UGCUUUGCCAAUUAAUCGCAUU
....---.......((....-..(((((((..((((-(((((((((......((((......)))).--..))))))))).-.))))...)))))))..))... ( -22.10)
>DroEre_CAF1 24995 99 - 1
AAAA---UCGCCCGACUUUAAUUUUGAUUGUUAAGCCUCGCAUACGCAAUUUCCAUAAUUCAAUGGC--CUCGAAUGCUGUUUGCUUUGGCAAUUAAUCGCAUU
....---..................(((((....(((..(((.(((((.((.((((......)))).--...)).))).)).)))...)))...)))))..... ( -17.00)
>DroYak_CAF1 27138 99 - 1
AAAA---AGCCCCGGUUUUAAUUUCGAUUGUUAAGCCUCGUAUUCACAAUUCCCAUAAUUCAAUGGC--CUCGAAUGCUGUUUGCUUUGGCAAUUAAUCGCAUU
..((---(((....))))).....((((((....(((..(((..((..((((((((......)))).--...))))..))..)))...)))...)))))).... ( -19.00)
>DroAna_CAF1 26988 104 - 1
AAAGUGAAUACCCAGAUGAAAUAUUAAUACUCGAGCACGGAACUCACAAUUCCCAUAAUUCAAUGGGUGUUCGACUUUUGUUUGAGUUGGCAAUUAAUCGUGUA
.(((((((((((((..((((.(((........(((.......))).........))).)))).))))))))).))))(((((......)))))........... ( -20.73)
>consensus
AAAA___UCCCCCGGCUUUAAUUUUGAUUGUUAAGCCUAGCAUUCGCAAUUCCCAUAAUUCAAUGGC__CUCGAAUGCUGUUUGCUUUGCCAAUUAAUCGCAUU
.......................(((((((..((((.(((((((((......((((......)))).....)))))))))...))))...)))))))....... (-15.41 = -16.22 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:16 2006