Locus 7175

Sequence ID 3R_DroMel_CAF1
Location 18,912,899 – 18,912,997
Length 98
Max. P 0.600818
window11603

overview

Window 3

Location 18,912,899 – 18,912,997
Length 98
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 81.83
Mean single sequence MFE -30.18
Consensus MFE -17.83
Energy contribution -19.22
Covariance contribution 1.39
Combinations/Pair 1.10
Mean z-score -2.06
Structure conservation index 0.59
SVM decision value 0.14
SVM RNA-class probability 0.600818
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18912899 98 + 27905053
CAGUGAGCAAUGUGCUCCGGCCACGCCACAAAGGCCACAGAUAUGGCACUGAAUGCAGUCGGCGACGAGCGUUAAAUGCUCGCUCCGUAAACGCCAAU
..(.((((.....)))))((((..........)))).......((((((((....))))(((.(.(((((((...)))))))).))).....)))).. ( -34.20)
>DroPse_CAF1 27311 81 + 1
CAAUGAGCAAUGUGGCACGGCCACGCCACAGAAGCCACAGAUACAGCACUGAGUG-----------GAGCGUUAAAUGCUCACUCG-----C-CCAAA
...((.((..((((((..(((...)))......))))))...........(((((-----------.(((((...)))))))))))-----)-.)).. ( -24.80)
>DroSec_CAF1 23119 98 + 1
CAGUGAGCAAUGUGCUCCGGCCACGCCACAAAGGCCACAGAUAUGGCACUGAAUGCAGUCGACGAUGAGCGUUAAAUGCUCGCUUCGUAAACGCCAAU
..(.((((.....)))))((((..........)))).......((((((((....))))..(((((((((((...)))))))..))))....)))).. ( -31.00)
>DroSim_CAF1 24077 98 + 1
CAGUGAGCAAUGUGCUCCGGCCACGCCACAAAGGCCACAGAUAUGGCACUGAAUGCAGUCGACGAUGAGCGUUAAAUGCUCGCUUCGUAAACGCCAAU
..(.((((.....)))))((((..........)))).......((((((((....))))..(((((((((((...)))))))..))))....)))).. ( -31.00)
>DroEre_CAF1 22852 98 + 1
CAGUGAGCAAUGUGCUCCGGCCACGCCACAAAGGCCACAGAUAUGGCACUGCAUGCAGUCAGAGACGAGCGUUAAAUGCUCGCUCCGUAAACGCCAAU
..(.((((.....)))))((((..........)))).......((((((((....))))..(((.(((((((...)))))))))).......)))).. ( -34.40)
>DroPer_CAF1 27376 81 + 1
CAAUGAGCAAUGUGGCACGGCCACGCCACAGAAGCUACAGAUACAGCACUGAGUG-----------GAGCGUUAAAUGCUCACUCG-----C-CCAAA
...((.((..((((((........))))))...(((........)))...(((((-----------.(((((...)))))))))))-----)-.)).. ( -25.70)
>consensus
CAGUGAGCAAUGUGCUCCGGCCACGCCACAAAGGCCACAGAUAUGGCACUGAAUGCAGUCG_CGA_GAGCGUUAAAUGCUCGCUCCGUAAACGCCAAU
.((((((((.(.(((((.(((...)))......((((......))))...................)))))...).)))))))).............. (-17.83 = -19.22 +   1.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:13 2006