| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,906,543 – 18,906,638 |
| Length | 95 |
| Max. P | 0.842068 |
| Location | 18,906,543 – 18,906,638 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 79.02 |
| Mean single sequence MFE | -28.83 |
| Consensus MFE | -22.77 |
| Energy contribution | -23.10 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.842068 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18906543 95 + 27905053 CGGCACGCGUCAAAGGGUAAAGGCCGUAAAGCUGUCGUUGCGGCCCAUUGAACCAUUCAGCCAAAAGUGUGCCA------CCAGCUAACA-UCCAAACAACC-------- .(((((((.......(((...((((((((........))))))))...(((.....))))))....))))))).------..........-...........-------- ( -28.90) >DroPse_CAF1 19769 88 + 1 CGGCACGCGUCAAAGGGUAAAGGCCGUAAAGCUGUCGUUGCGGCCCA--------UUCAGGCAGAAGUAUGCCAGCG---CCAGCGAAAA------AAAACC-----ACC .(((....)))....(((...((((((((........))))))))..--------(((.((((......)))).((.---...)))))..------...)))-----... ( -27.10) >DroSec_CAF1 16774 103 + 1 CGGCACGCGUCAAAGGGUAAAGGCCGUAAAGCUGUCGUUGCGGCCCAUUGAACCAUUCAGCCAGAAGUGUGCCA------CCAGCUAACA-UCCAAACAACCAAACAACC .(((((((.((....(((...((((((((........))))))))...(((.....)))))).)).))))))).------..........-................... ( -29.90) >DroEre_CAF1 16591 109 + 1 CGGCACGCGUCAAAGGGUAAAGGCCGUAAAGCUGUCGUUGCGGCCCAUUGAACCAUUCAGCCAGAAGUGUGCCACCGCUACCAGCUAACA-UCCAAACAUCCAAACAACC .(((((((.((....(((...((((((((........))))))))...(((.....)))))).)).)))))))...((.....)).....-................... ( -30.90) >DroAna_CAF1 17313 99 + 1 CGGCACGCGUCAAAGGGUAAAGGCCGUAAAGCUGUCGUUGCGGCCCAUUGA--------GGCAGAAGUGUGCCAGC---ACCAGCCAAAAAGCCAGCUCGCCAAACGAUA .(((..((.......(((...((((((((........))))))))......--------(((....((((....))---))..))).....))).))..)))........ ( -29.10) >DroPer_CAF1 19773 88 + 1 CGGCACGCGUCAAAGGGUAAAGGCCGUAAAGCUGUCGUUGCGGCCCA--------UUCAGGCAGAAGUAUGCCAGCG---CCAGCGAAAA------AAAACC-----AGC .(((....)))....(((...((((((((........))))))))..--------(((.((((......)))).((.---...)))))..------...)))-----... ( -27.10) >consensus CGGCACGCGUCAAAGGGUAAAGGCCGUAAAGCUGUCGUUGCGGCCCAUUGA____UUCAGCCAGAAGUGUGCCAGC____CCAGCUAAAA_UCCAAACAACC_____ACC .(((((((.((....))....((((((((........)))))))).....................)))))))..................................... (-22.77 = -23.10 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:09 2006