Locus 7171

Sequence ID 3R_DroMel_CAF1
Location 18,905,160 – 18,905,253
Length 93
Max. P 0.830439
window11598

overview

Window 8

Location 18,905,160 – 18,905,253
Length 93
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 81.90
Mean single sequence MFE -30.46
Consensus MFE -16.01
Energy contribution -17.61
Covariance contribution 1.60
Combinations/Pair 1.10
Mean z-score -2.44
Structure conservation index 0.53
SVM decision value 0.71
SVM RNA-class probability 0.830439
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18905160 93 + 27905053
GCUGCCACGAUGAGUGGCAAAUGCUCUGGCUGUGGCUAUAUGGCUAUAUGGGUA--------UAUGGAUAUGUGGCUAUGGAUCAAACUAUUGAUUUUGCC
((((((((.....))))))...))...(((.(((((((((((.((((((....)--------))))).)))))))))))(((((((....))))))).))) ( -32.70)
>DroSec_CAF1 15446 85 + 1
GCUGCCACGAUGAGUGGCAAGUGCUCUGGCUGUGGCUAU--------AUGGGUA--------UAUGGCUAUAUGACUAUGGCUCAAACUAUUGAUUUUGCC
((((((((.....)))))).(.(((.(((((((((((((--------((....)--------)))))))))).).))).))).)..............)). ( -28.00)
>DroSim_CAF1 15970 85 + 1
GCUGCCACGAUGAGUGGCAAGUGCUCUGGCUGUGGCUAU--------AUGGGUA--------UAUGGCUAUAUGGCUAUGGCUCAAACUAUUGAUUUUGCC
((((((((.....))))))(((.....((((((((((((--------((((.(.--------...).))))))))))))))))...))).........)). ( -32.90)
>DroEre_CAF1 15301 99 + 1
GCUGCCAUGAUGAGUGGCAAGUGCUCUGGCUGUGGCUAUAUGGCUAUAUGGUUAUAAGGCUACAUGAC--UAUGGCUAUGGCUCAAACUAUUGAUUUUGCC
((((((((.....))))).)))(((.(((((((((((.(((((((....))))))).))))))).).)--)).)))...(((((((....))))....))) ( -31.80)
>DroYak_CAF1 16832 95 + 1
GCUGCCAUGAUGAGUGGCAAAUGCUCUGG------CUAUAUGGCUAUAUGGGUAGAUGGGUAGAUGGGUAUAUGGCUAUGGCUCAAACUAUUGAUUUUGCC
((((((((.....))))))...(((.(((------(((((((.((((...(.(.....).)..)))).)))))))))).)))................)). ( -26.90)
>consensus
GCUGCCACGAUGAGUGGCAAGUGCUCUGGCUGUGGCUAUAUGGCUAUAUGGGUA________UAUGGCUAUAUGGCUAUGGCUCAAACUAUUGAUUUUGCC
((((((((.....))))))........(((((((((((((..............................)))))))))))))...............)). (-16.01 = -17.61 +   1.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:08 2006