Locus 7170

Sequence ID 3R_DroMel_CAF1
Location 18,901,294 – 18,901,406
Length 112
Max. P 0.531784
window11597

overview

Window 7

Location 18,901,294 – 18,901,406
Length 112
Sequences 4
Columns 112
Reading direction reverse
Mean pairwise identity 83.99
Mean single sequence MFE -23.00
Consensus MFE -17.80
Energy contribution -17.80
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.45
Structure conservation index 0.77
SVM decision value -0.00
SVM RNA-class probability 0.531784
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18901294 112 - 27905053
AGGUGGUCGAGAAGCAGCAGCAGAAGUUCAAUAAGAACAGCAACUUGAAUGGUGAGACAUUGCCAAUUAACACAGAGUGUAUGUAAUACAUACUAUGUAUGUAGAACACAUU
..(((.(((((..((....))....((((.....)))).....))))).(((..(....)..))).....)))...((((......(((((((...)))))))..))))... ( -26.10)
>DroSec_CAF1 11554 90 - 1
AGGUGGUCGAGAAGCAGCAGCAGAAGUUCAAUAAGAACAGCAACUUGAAUGGUGAGACAUUGCCAAUUAACACAGAGUG----------------------UAGAGCACAUU
..(((.(((((..((....))....((((.....)))).....))))).(((..(....)..))).....)))...(((----------------------.....)))... ( -20.60)
>DroSim_CAF1 12440 98 - 1
AGGUGGUCGAGAAGCAGCAGCAGAAGUUCAAUAAGAACAGCAACUUGAAUGGUGAGACAUUGCCAAUUAACACAGAGUGUAU--------------CUAUGUAGAGCACAUU
..(((.(((((..((....))....((((.....)))).....))))).(((..(....)..))).....)))...((((.(--------------((....)))))))... ( -22.70)
>DroYak_CAF1 12277 96 - 1
AGGUGGUCGAGAAGCAGCAGCAGAAGUUCAACAAGAACAGCAACUUGAAUGGUGAGACAUUGCCAAUUAACACAGAUA--------------CC--CUCUGUGGCAUACAUU
..(((.(((((..((....))....((((.....)))).....))))).(((..(....)..))).....((((((..--------------..--.)))))).)))..... ( -22.60)
>consensus
AGGUGGUCGAGAAGCAGCAGCAGAAGUUCAAUAAGAACAGCAACUUGAAUGGUGAGACAUUGCCAAUUAACACAGAGUG_________________CUAUGUAGAACACAUU
..(((.(((((..((....))....((((.....)))).....))))).(((..(....)..))).....)))....................................... (-17.80 = -17.80 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:07 2006