Locus 717

Sequence ID 3R_DroMel_CAF1
Location 2,535,668 – 2,535,761
Length 93
Max. P 0.685758
window1135

overview

Window 5

Location 2,535,668 – 2,535,761
Length 93
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 76.83
Mean single sequence MFE -34.52
Consensus MFE -19.60
Energy contribution -19.73
Covariance contribution 0.13
Combinations/Pair 1.26
Mean z-score -1.66
Structure conservation index 0.57
SVM decision value 0.32
SVM RNA-class probability 0.685758
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2535668 93 + 27905053
GGUACUCGC---CGUGCAGCGCCUGCUGCU---------------UGUUGUGCGGA---UUGUGGUGCGGCGAGGCGGCGAAUUCGAUAUCGUAUUUGCCGUAGUAGUCUUGCG
.((((((((---((..(.(((.((((.((.---------------....)))))).---.))).)..)))))))(((((((((.((....)).)))))))))........))). ( -41.40)
>DroVir_CAF1 1152 108 + 1
GAUAAUCGC---CGUGAAGUGGUUGUUGUUGCUGCUGUUGCUGUUGCUUGUGCGGG---UUGUGGUGCGGCGAGGCGGCGAAUUCAAUAUCGUAUUUGCCGUAAUAAUCCUGCG
(((((((((---......)))))))))((.((.((....)).)).))....(((((---...((.(((((((((...((((........)))).))))))))).))..))))). ( -37.10)
>DroPse_CAF1 7676 96 + 1
GAUACUCGCCCGCGUGCAGCGACUGUUGCU---------------UG---UGCGGAUUAUUGUGGUGCGGUGAGGCGGCGAAUUCAAUAUCGUAUUUGCCAUAAUAGUCCUGUG
......(((.((((.(((((....))))).---------------))---)).(((((((((((((((......)).((((........))))....))))))))))))).))) ( -31.70)
>DroEre_CAF1 2239 93 + 1
GGUACUCGC---CGUGCAGCGUCUGCUGCU---------------UGUUGUGCGGA---UUGUGGUGCGGUGAGGCGGCGAAUUCGAUGUCGUAUUUGCCGUAGUAGUCCUGCG
....(((((---((..(.((((((((.((.---------------....)))))))---.))).)..)))))))(((((((((.((....)).))))))))).(((....))). ( -42.70)
>DroAna_CAF1 1149 78 + 1
GAUAUUCGC---CGUGCAGCGCCUGC---------------------------------UUGUGGUGUGGUGAGUUGGCGAAUUCAAUAUCGUAUUUGCCGUAAUAGUCCUGCG
(((((((((---((..(.(((.....---------------------------------.))).)..)))))))).(((((((.(......).)))))))......)))..... ( -22.50)
>DroPer_CAF1 7723 96 + 1
GAUACUCGCCCGCGUGCAGCGACUGUUGCU---------------UG---UGCGGAUUAUUGUGGUGCGGCGAGGCGGCGAAUUCAAUAUCGUAUUUGCCAUAAUAGUCCUGUG
......(((.((((.(((((....))))).---------------))---)).(((((((((((((((......)).((((........))))....))))))))))))).))) ( -31.70)
>consensus
GAUACUCGC___CGUGCAGCGACUGCUGCU_______________UG___UGCGGA___UUGUGGUGCGGCGAGGCGGCGAAUUCAAUAUCGUAUUUGCCGUAAUAGUCCUGCG
....(((((...(((((.(((....((((......................)))).....))).))))))))))(((((((((.(......).)))))))))............ (-19.60 = -19.73 +   0.13) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:07 2006