| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,898,893 – 18,898,984 |
| Length | 91 |
| Max. P | 0.833942 |
| Location | 18,898,893 – 18,898,984 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 87.42 |
| Mean single sequence MFE | -30.82 |
| Consensus MFE | -20.62 |
| Energy contribution | -21.92 |
| Covariance contribution | 1.30 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.69 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.833942 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18898893 91 + 27905053 UCUCGCUGCCGUUAGCCGGCUCGAGCAUUGCGGCAGCUGAGUUAUGCCAGCACUGGGCCAUAAAAGCUGGCUUAAAGGCUGAUAUUUCAAU .(((((((((((..((((...)).))...)))))))).)))......((((..(((((((.......)))))))...)))).......... ( -34.20) >DroSec_CAF1 9203 89 + 1 UCUCGAUGCCGUUAGGCGGCUCGAGCAUUGCGGCAACGCA--UAACUCAGCACUGGGCAAUAAAAGCUGGCUUAAAGGCUGAUAUUUCAAU .(((((.((((.....)))))))))...((((....))))--....(((((..(((((...........)))))...)))))......... ( -31.40) >DroSim_CAF1 9365 75 + 1 UCUCGAUGCCGUUAGGC--------------GGCAACGCA--UAACUCAGCACUGGGCCAUAAAAGCUGGCUUAAAGGCUGAUAUUUCAAU ....((....((((.((--------------(....))).--))))(((((..(((((((.......)))))))...)))))....))... ( -25.10) >DroEre_CAF1 9198 89 + 1 UCUCGACGCCGUUAGGUGGCUCGAGCAUUGCGGCAACGCA--UAACUCAGCACUGGGCCAUAAAAGCUGGCUUAAAGGCUGAUAUUUCAAU .(((((.((((.....)))))))))...((((....))))--....(((((..(((((((.......)))))))...)))))......... ( -33.60) >DroYak_CAF1 9792 89 + 1 UCUCGAUGCCGUUAGGUGGCUGGAGCAUUGCGGCAACGCA--UAACUCAGCACUGGGCCAUAAAAGCUGGCUUAAAGGCUGAUAUUUCAAU .(((.(.((((.....))))).)))...((((....))))--....(((((..(((((((.......)))))))...)))))......... ( -29.80) >consensus UCUCGAUGCCGUUAGGCGGCUCGAGCAUUGCGGCAACGCA__UAACUCAGCACUGGGCCAUAAAAGCUGGCUUAAAGGCUGAUAUUUCAAU ...((.((((((......((....))...)))))).))........(((((..(((((((.......)))))))...)))))......... (-20.62 = -21.92 + 1.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:06 2006