Locus 7168

Sequence ID 3R_DroMel_CAF1
Location 18,890,841 – 18,890,941
Length 100
Max. P 0.993169
window11595

overview

Window 5

Location 18,890,841 – 18,890,941
Length 100
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 72.87
Mean single sequence MFE -30.30
Consensus MFE -13.80
Energy contribution -13.53
Covariance contribution -0.27
Combinations/Pair 1.56
Mean z-score -2.63
Structure conservation index 0.46
SVM decision value 2.38
SVM RNA-class probability 0.993169
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18890841 100 - 27905053
AGUGGGUGGUU------GUUGUAGUUGC---UGGUCGC-CGGACAAAUGAAUAGCUUUUGUUGUGCAUUUUUAAUGCAUGGUCGAGACUUUUCGCCGGAUUAUGACAUCA
......((((.------((..(((((((---..(((..-..)))....(((.((.((((((..(((((.....)))))..).))))))).)))))..)))))..)))))) ( -24.80)
>DroSec_CAF1 1201 103 - 1
AGUGAAUGGUU---GUUGUUGCAGUUGC---UGGUCGC-CGGACAAAUUAAUAGCCUUUGUUGUGCAUUUUUAAUGCAUGGUCGAGACUUUUCGCCGGAUUAUGACAUCA
.(((((.((((---(((((((...((((---(((...)-))).)))..)))))))..((((..(((((.....)))))..).))))))).)))))............... ( -25.10)
>DroEre_CAF1 1291 106 - 1
AGUGGUUGGUUGUAGUUGUUGUAGUUGC---UUGUUGC-CGGACAAACUAACAGCCUUUGUUGUGCAUUUUUAAUGCAUGGCCGAGGCUUUGCGCCGGAUUAUGACAUCA
..............(.(((..(((((((---.....))-(((.(((......((((((.((..(((((.....)))))..)).)))))))))..))))))))..))).). ( -31.70)
>DroYak_CAF1 1394 101 - 1
AGUGGUUGGU------UGUUGUAGUUGC---UUGUUGCCCGGACAAGUUAAUAGCCUUUGUUGUGCAUUUUUAAUGCAUGGCCGAGGCUUUGCGCCGGAUUAUGACAUCA
......((((------.((..((((.((---.....))((((....((....((((((.((..(((((.....)))))..)).))))))..)).))))))))..)))))) ( -35.30)
>DroAna_CAF1 1571 102 - 1
AUUG----GCUAU---AGCUUUAGCUUUUUGUUGUGGCCAGGUGAAAUUAAUUGCCUCAGUUGUGCAUUUUUUAUGCACAGUCGG-GUUUUUCGCUCGAUUAUGACAUCA
..((----(((((---(((...........))))))))))((..(......)..))...(((((((((.....))))))((((((-((.....))))))))..))).... ( -33.70)
>DroPer_CAF1 1205 76 - 1
---------------------------------GAUUC-UGGUGAAAUUAAUUGCCUUUGUUAUGCAUUUUUAAUGCAUGCCAGAGGCUUUUCACCGGAUUAUGACAUCA
---------------------------------...((-((((((((......(((((((.(((((((.....))))))).))))))).))))))))))........... ( -31.20)
>consensus
AGUGG_UGGUU_____UGUUGUAGUUGC___UUGUUGC_CGGACAAAUUAAUAGCCUUUGUUGUGCAUUUUUAAUGCAUGGCCGAGGCUUUUCGCCGGAUUAUGACAUCA
.......................................(((..........((((((.(((((((((.....))))))))).)))))).....)))............. (-13.80 = -13.53 +  -0.27)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:05 2006