Locus 7166

Sequence ID 3R_DroMel_CAF1
Location 18,886,186 – 18,886,306
Length 120
Max. P 0.954051
window11589

overview

Window 9

Location 18,886,186 – 18,886,306
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 93.33
Mean single sequence MFE -54.76
Consensus MFE -46.98
Energy contribution -47.10
Covariance contribution 0.12
Combinations/Pair 1.09
Mean z-score -1.73
Structure conservation index 0.86
SVM decision value 1.44
SVM RNA-class probability 0.954051
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18886186 120 + 27905053
UGAUGAAUCUGUGGAUGCUGCUGCUGCUGCGGCGGGACGGCGUAGUGAGCGGGCGAGUGUGGCCGCUGGGGCAGUUGCAACAUGUUGGCAUAGGAGGCGCUUAGCAGGCCCUGAUCUGCA
..........(((..(((.((((((.(.(((((.(.((..(((.(....)..))).)).).))))).).)))))).))).)))....(((.(..(((.(((.....))))))..).))). ( -45.30)
>DroSec_CAF1 450 120 + 1
UGGUGGAUCUGUGGAUGCUGCUGCUGCUGCGGCGGUACGGCGUAGUGAGCGGGCGAGUGUGGCCGCUGCGGCAGCUGCAUCAUGUUGGCGUAGGAGGCGCUGAGCAGGCCCUGAUCUGCA
..(..((((.(.((.((((((.(((((((((((((((((.(((.(....)..)))..))).)))))))))))))).))).....(..((((.....))))..))))..))).))))..). ( -60.60)
>DroSim_CAF1 95 120 + 1
UGGUGGAUCUGUGGAUGCUGCUGCUGCUGCGGCGGAACGGCGUAGUGAGCGGGCGAGUGUGGCCGCUGGGGCAGCUGCAUCAUGUUGGCGUAGGAGGCGCUGAGCAGGCCCUGAUCUGCA
..(..((((....(((((.((((((((((((.((...)).)))))).(((((.((....)).)))))..)))))).))))).(((((((((.....))))).))))......))))..). ( -56.10)
>DroEre_CAF1 229 120 + 1
UGGUGGAGCUGGGGAUGCUGCUGCUGCUGUGGCGGGACGGCGUAGUGGGCGGGCGAAUGUGGCCGCUGGGGCAGUUGCAGCAUGUUGGCGUAGGAGGCGCUAAGCAGGCCCUGAUCUGCA
..(..((..((((((((((((.((((((.((((((..(.((((.((......))..)))).))))))).)))))).))))))).(((((((.....))))))).....))))).))..). ( -55.60)
>DroYak_CAF1 92 120 + 1
UGGUGGAGCUGGGGAUGCUGCUGCUGCUGUGGCGGGACGGCGUAGUGGGCGGGCGAGUGCGGCCGCUGGGGCAGUUGCAGCAUGUUGGCGUACGAGGCGCUGAGCAGGCCCUGAUCUGCA
..(..((..((((((((((((.(((((((((((.(.((..(((.(....)..))).)).).)))))...)))))).)))))))((((((((.....))))).)))...))))).))..). ( -56.20)
>consensus
UGGUGGAUCUGUGGAUGCUGCUGCUGCUGCGGCGGGACGGCGUAGUGAGCGGGCGAGUGUGGCCGCUGGGGCAGUUGCAGCAUGUUGGCGUAGGAGGCGCUGAGCAGGCCCUGAUCUGCA
..(((((((.(.((.(((.((((((((((((.((...)).)))))).(((((.((....)).)))))..)))))).)))...(((((((((.....))))).))))..))).))))))). (-46.98 = -47.10 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:59 2006