Locus 7165

Sequence ID 3R_DroMel_CAF1
Location 18,883,889 – 18,883,991
Length 102
Max. P 0.882073
window11588

overview

Window 8

Location 18,883,889 – 18,883,991
Length 102
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 72.71
Mean single sequence MFE -24.88
Consensus MFE -16.80
Energy contribution -17.16
Covariance contribution 0.36
Combinations/Pair 1.16
Mean z-score -1.53
Structure conservation index 0.68
SVM decision value 0.92
SVM RNA-class probability 0.882073
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18883889 102 + 27905053
--------------CC---CCAGACUUCGAAAA-CUUCUUAUCAGCAGUAGAAACUGUUUUUGAGGGACCUGCAGAAACAGUGACUAUAAAGUUUUAUAAGCAUUCGAUAAGAGGCGACU
--------------..---.......(((....-(((((((((....((((..((((((((((((....)).))))))))))..))))...(((.....)))....)))))))))))).. ( -28.00)
>DroSec_CAF1 3299 86 + 1
-------------------------CUCGAAAA-CUUCUUAU-------UGAAACUGUU-UUGAGGGACCUGCAGAAACAGCGACUGUAAAUUUUUAUAAGCAUUCGAUAAGAGGCGACG
-------------------------.(((....-((((((((-------((((.(((((-((.((....))...))))))).(..(((((....)))))..).))))))))))))))).. ( -21.30)
>DroSim_CAF1 3339 93 + 1
-------------------------CUCGAAAA-CUUCUUAUCAGCAGUUGAAACUGUU-UUGAGGGACCUGCAGAAACAGCGACUGUAAAGUUUUAUAAGCAUUCGAUAAGAGGCGACG
-------------------------.(((....-(((((((((.(((((((...(((((-((.((....))...))))))))))))))...(((.....)))....)))))))))))).. ( -26.10)
>DroEre_CAF1 3355 118 + 1
CCUAAUAGAGUAUUCCGAACAAGAU-UUAAGAAG-UUCUUAUCAGCAGUAGGAACUGUUUUUGAGGGACCUGCAAAAACAGAAGUAGUAAAGUUUUAUUAGCAUUCGAUAAGGGGCGACG
.(((((((((..((((..((.....-.((((...-..))))......)).))))(((((((((((....)).)))))))))...........)))))))))...(((........))).. ( -23.40)
>DroYak_CAF1 3363 113 + 1
CCUAAAAGAGCAUUCCAAACAAGAA-UUGAAAAGCUUCUUAUCAGCAGUAGAAACUGUUUUUGAGGGACCUGCAGAAA------GAGUAAAGUUUUAUUAGCAUUCGAUAAGGGGCGACG
.........................-.......((((((((((.((((((((((((.((((((((....)).))))))------.)))....))))))).))....)))))))))).... ( -25.60)
>consensus
______________CC___C_AGA__UCGAAAA_CUUCUUAUCAGCAGUAGAAACUGUUUUUGAGGGACCUGCAGAAACAGCGACUGUAAAGUUUUAUAAGCAUUCGAUAAGAGGCGACG
..................................(((((((((...........(((((((((((....)).)))))))))....(((((....))))).......)))))))))..... (-16.80 = -17.16 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:58 2006