Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 18,880,981 – 18,881,087 |
Length | 106 |
Max. P | 0.970655 |
Location | 18,880,981 – 18,881,087 |
---|---|
Length | 106 |
Sequences | 3 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 81.82 |
Mean single sequence MFE | -22.29 |
Consensus MFE | -15.57 |
Energy contribution | -17.14 |
Covariance contribution | 1.57 |
Combinations/Pair | 1.20 |
Mean z-score | -2.69 |
Structure conservation index | 0.70 |
SVM decision value | 1.66 |
SVM RNA-class probability | 0.970655 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18880981 106 - 27905053 CAGGUAAUAAUAUAUAUAGCAAAU-----ACCAUUCAAUAGCCUUAUCGCCGAAGUGGCAACAGUUGUCGCAUUGAACACUAAUUGCCAUCAAUCAAAAUGCCAAAUCAUU ..((((............((((.(-----(...((((((.((......))....((((((.....))))))))))))...)).))))............))))........ ( -16.95) >DroEre_CAF1 548 108 - 1 CAGGUAAUCAUAU---GGGCACUUUUCCCAACAUUCAAUGGCCUUAUCACCACAGUGACAACGGCUGUUGAAUUGAACACUAAUUGCCAUCAAUCAAAAUACCAAUUAAUU ..((((((....(---(((.......))))..(((((((((((((.((((....)))).)).))))))))))).........))))))....................... ( -26.70) >DroYak_CAF1 558 108 - 1 CAGGUAAUCGUAU---UGGCAAUUUUCCCAACUUUCAAUGGCCUUAUCAGCACAGUGACAACAGUUGCUGAAUUGAACACUAAUUGCCAUCAAUCAAAAUACCAAUUAAUU ..((((.......---((((((((...(((........))).....((((..(((..((....))..)))..)))).....))))))))..........))))........ ( -23.23) >consensus CAGGUAAUCAUAU___UGGCAAUUUUCCCAACAUUCAAUGGCCUUAUCACCACAGUGACAACAGUUGUUGAAUUGAACACUAAUUGCCAUCAAUCAAAAUACCAAUUAAUU ..((((...........(((((((........((((((((((....((((....)))).....))))))))))........)))))))...........))))........ (-15.57 = -17.14 + 1.57)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:57 2006