Locus 7163

Sequence ID 3R_DroMel_CAF1
Location 18,879,959 – 18,880,070
Length 111
Max. P 0.641500
window11586

overview

Window 6

Location 18,879,959 – 18,880,070
Length 111
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 77.29
Mean single sequence MFE -28.18
Consensus MFE -11.76
Energy contribution -11.76
Covariance contribution -0.00
Combinations/Pair 1.22
Mean z-score -1.92
Structure conservation index 0.42
SVM decision value 0.22
SVM RNA-class probability 0.641500
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18879959 111 - 27905053
AACUUAA---------UUUUUUGUAGGAGCCAGAAAUCAUACGGUACAUUGCUCGACCAUUCAAAGGGCUGUGCAGUGAAACCAAUUUGCUGCAUACGGCGCGUUAUUUGCAAACUAAUA
.......---------...(((((((((((.....(((....))).....))))...........(.(((((((((..((.....))..))))..))))).).....)))))))...... ( -25.80)
>DroSec_CAF1 6522 111 - 1
AACUUAA---------UUUAUUGUAGGAGCCGCAAAUCGUACGGUACAUUGCUAGACCAAUCAAAGGACUGUGCAGUGAAACCAAUUUGCUGCAUACGGCGUGUAAUUUGCAAACUAAUA
..((((.---------.......))))....((((((..((((((.(((((((((.((.......)).))).))))))..))).....((((....)))))))..))))))......... ( -28.90)
>DroSim_CAF1 7779 111 - 1
AACUUAA---------UUUAUUGUAGGAACCGCAAAUCGUACGGUACAUUGCUAGACCAAUCAAAGGACUGUGCAGUGAAACCAAUUUGCCGCAUACGGCGUGUAAUUUGCAAACUAAUA
..((((.---------.......))))....((((((..((((((.(((((((((.((.......)).))).))))))..))).....((((....)))))))..))))))......... ( -31.10)
>DroEre_CAF1 6600 109 - 1
AACAUGAAUUAUA--AUUCAUUUUAGGAGCCGCAAAUCCUAUGGUAUCUUGGACGACCAA---------UAUGCUGUGAAACAAAUUUGUUGUUUGUGUCAUGUAAUUUGCAAACUAAUA
.((((((......--.(((((..(((((........))))).(((((.((((....))))---------.))))))))))((((((.....)))))).))))))................ ( -24.20)
>DroYak_CAF1 7871 120 - 1
AAGUUAAAUUAUUAUAUUCCUUUUAGGAGUCGCAAAUCUUACGGUGUUUUGGUCGACCAUUCAAGGGGCUAUGCUGUGAAACCAAUUGGUUGUUUGUGGCAUGUAAUUUGCAAACUAAUA
.((((.....((((((((((.....)))(((((((((.(((((((....(((((..((......))))))).)))))))((((....)))))))))))))))))))).....)))).... ( -30.90)
>consensus
AACUUAA_________UUUAUUGUAGGAGCCGCAAAUCGUACGGUACAUUGCUCGACCAAUCAAAGGACUGUGCAGUGAAACCAAUUUGCUGCAUACGGCGUGUAAUUUGCAAACUAAUA
.......................(((.....((((((..((((((..........)))...........(((((.(..((.....))..).)))))....)))..))))))...)))... (-11.76 = -11.76 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:56 2006