| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,878,336 – 18,878,455 |
| Length | 119 |
| Max. P | 0.650368 |
| Location | 18,878,336 – 18,878,455 |
|---|---|
| Length | 119 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.67 |
| Mean single sequence MFE | -42.55 |
| Consensus MFE | -26.93 |
| Energy contribution | -28.18 |
| Covariance contribution | 1.26 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.650368 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18878336 119 - 27905053 GACGGUAGCGGCUGUCCGCAUGCUGGAGAUUCAUCUCCUGGAGAAUGACUGCCGAUCUUCG-GGUGGCCACCAAUAGGUGGUUGCACAAAUGCGUGAGCAAUGUGAUCUCCGCCAGCGAG ((((((....))))))(((.((.(((((((((((...(((((((.((.....)).))))))-)(..((((((....))))))..).....(((....)))))).)))))))).))))).. ( -51.30) >DroSec_CAF1 4906 119 - 1 GACGGUAGCGACUGUCCGCAUGCUGGAGAUUCAUCUCCUGGAGAAUGACUGCCGAUCUUCG-GGUGGCCACCAAAAGGUGGUUGCACAAAUGUGUGAGCAAUGUGAUCUCCGCCAGCGAG ((((((....))))))(((.((.(((((((((((((((((((((.((.....)).))))))-)(..((((((....))))))..)..........)))..))).)))))))).))))).. ( -47.80) >DroSim_CAF1 6151 119 - 1 GACGGUAGCGGCUGUCCGCAUGCUGGAGAUUCAUCUCCUGGAGAAUGACUGCCGAUCUUCG-GGUGGCCACCAACAGGUGGUUGCACAAAUGCGUGAGCAAUGUGAUCUCCGCCAGCGAG ((((((....))))))(((.((.(((((((((((...(((((((.((.....)).))))))-)(..((((((....))))))..).....(((....)))))).)))))))).))))).. ( -51.30) >DroEre_CAF1 4972 119 - 1 GACGAUAGCGACAGUCCGCAUACUGCAGAUUCAUCUCCUGGAGAAUAACAGCCGAUCUUCG-GGUGGCCACCAGUAGGUGGUUGCACAAGUGCGAGAGCAAUGUGAUCUCCGCCAGCGAG ..((...((((.((((.((.....)).))))..))....(((((....((.(((.....))-).))((((((....))))))..((((..(((....))).)))).)))))))...)).. ( -40.30) >DroWil_CAF1 5558 119 - 1 GUUUGUAACGGCAAUCUGCAUGCAAAUAGUCGAUAUUUUGUAGGAUC-CUACCCGUUUUCGAAGUUUCCUCUAGAAUAUCAUUGCACAAAUGGGCAAGCAUAACAAUUUCGGCAAGAGAA (((((((...((.....)).))))))).((((((((((((.((((..-((...((....)).))..)))).))))))))).((((........)))).............)))....... ( -27.40) >DroYak_CAF1 6235 119 - 1 GACGAUAGCGACAGUCAGCAAACUGCAGAUUCAUCUCCUGGAGGAUAACUGCCGAUUUUCG-GGUGGCCACCAACAGGUGGUUGCACAAAUGCGAGAGCAAUGUGAUCUCCGCCAACGAG ..((....(((.((((.(((..((.(((.........))).))......))).)))).)))-((((((((((....)))))...((((..(((....))).))))....)))))..)).. ( -37.20) >consensus GACGGUAGCGACAGUCCGCAUGCUGGAGAUUCAUCUCCUGGAGAAUGACUGCCGAUCUUCG_GGUGGCCACCAAAAGGUGGUUGCACAAAUGCGUGAGCAAUGUGAUCUCCGCCAGCGAG ((((((....)))))).((.....(((((....))))).(((((...................(..((((((....))))))..).....(((....)))......)))))))....... (-26.93 = -28.18 + 1.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:55 2006