Locus 7161

Sequence ID 3R_DroMel_CAF1
Location 18,874,139 – 18,874,241
Length 102
Max. P 0.768607
window11584

overview

Window 4

Location 18,874,139 – 18,874,241
Length 102
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 79.37
Mean single sequence MFE -22.78
Consensus MFE -17.34
Energy contribution -17.46
Covariance contribution 0.12
Combinations/Pair 1.10
Mean z-score -1.60
Structure conservation index 0.76
SVM decision value 0.52
SVM RNA-class probability 0.768607
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18874139 102 - 27905053
UGGGCUCUUAUCGGCUACGAUCUUCAUCC-GCAGUUCCCACUGUGCGCGUGGGGAAAACAAUAUGGCCCAAACACAUAAAA-----AACAACAAAAAAAGGAAACAAC
((((((....(((....)))(((((((((-(((((....)))))).).))))))).........))))))...........-----.............(....)... ( -26.00)
>DroSec_CAF1 692 101 - 1
AGGGCUCUUAUCGGCAACGAUCUUCAUCC-GCAGUUCCCACUGUGCGCGUGGGGAAAACAAUAUGGCCCGAACCUAUAAAA--CGAAAAAAAAAAA----GAAACAAA
.(((((....(((....)))(((((((((-(((((....)))))).).))))))).........)))))............--.............----........ ( -26.30)
>DroSim_CAF1 1915 105 - 1
AGGGCUCUUAUCGCCACCGAUCUUCAUCC-GCAGUUCCCACUGUGCGCGUGGGGAAAACAAUAUGGCCCGAACCUAUAAAA--CGAAAAAAAAAAAAAACGAAACAAC
.(((((....(((....)))(((((((((-(((((....)))))).).))))))).........)))))............--......................... ( -22.10)
>DroEre_CAF1 666 87 - 1
AGGGCUCUUAUCGGCGUUGAUCUUCAUCC-GCAGUUCCCACUGUGCGCGCGGGGAAAACAAUAUAGCCAAA-CCAAUAAAACACG-------AAAA------------
..((((..(((.((((.((.....))..)-))..(((((...((....)).)))))..).))).))))...-.............-------....------------ ( -16.70)
>DroYak_CAF1 1966 96 - 1
AGGGCUCUUAUCGGCGUUGAUCUUCAUCCGGCAGUUCCCACUGUGCGCGUGGGGAAAACAAUAAAGCCAAAGCCUAUUAAAAACGUAAAAAAAAAA------------
.(((((......(((((((.(((((((.(((((((....))))).)).)))))))...))))...)))..))))).....................------------ ( -22.80)
>consensus
AGGGCUCUUAUCGGCAACGAUCUUCAUCC_GCAGUUCCCACUGUGCGCGUGGGGAAAACAAUAUGGCCCAAACCUAUAAAA__CG_AAAAAAAAAA____GAAACAA_
.(((((....(((....)))(((((((...(((((....)))))....))))))).........)))))....................................... (-17.34 = -17.46 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:54 2006