| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,872,689 – 18,872,808 |
| Length | 119 |
| Max. P | 0.735609 |
| Location | 18,872,689 – 18,872,808 |
|---|---|
| Length | 119 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 92.20 |
| Mean single sequence MFE | -38.43 |
| Consensus MFE | -33.09 |
| Energy contribution | -32.87 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.735609 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18872689 119 - 27905053 AUCGUGCUCAUGGCA-ACCAUAUCGCGCUCCAAUAAUCACAUAUGCAUCUUGGGGCGUCGAAUUAUGGAGAAGUCAAUUGCCAAUGGGCGCCAAUGCCACUGGACAAGGUCAAGUGAUGA ...((((((((((((-(((((((((((((((((....((....))....)))))))).)))..))))).(....)..))))).))))))))......((((.(((...))).)))).... ( -42.20) >DroSim_CAF1 506 120 - 1 AUGGUAUCCAUAACAUACCAUAUCGCGCUCCAAUAAUCACAUUUGCAUCUUGGGGCGUCGAAUUAUGGAGAAGUCAAUUGCCAAUGGGCGCCAAUGCCAGUGGACAAGGUCAAGUGAUGA ........(((.((...((((((((((((((((....((....))....)))))))).)))..))))).((......((((((...((((....))))..))).)))..))..)).))). ( -32.40) >DroYak_CAF1 533 118 - 1 GUCGUGCUCAUGGCA-ACCAUAUCGCGCUCCAAAAAUCACAUAUGCAUCUUGGGGCGUCGAAUUAUGGAAAAGUCAAUUGCCAG-GGGCGCCAAUGCCACUGGACAAGGUCAAGUGAUGA ...((((((.(((((-(((((((((((((((((....((....))....)))))))).)))..))))).........)))))).-))))))......((((.(((...))).)))).... ( -40.70) >consensus AUCGUGCUCAUGGCA_ACCAUAUCGCGCUCCAAUAAUCACAUAUGCAUCUUGGGGCGUCGAAUUAUGGAGAAGUCAAUUGCCAAUGGGCGCCAAUGCCACUGGACAAGGUCAAGUGAUGA ........(((.((...((((((((((((((((....((....))....)))))))).)))..))))).........((((((...((((....))))..))).)))......)).))). (-33.09 = -32.87 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:51 2006