Locus 7158

Sequence ID 3R_DroMel_CAF1
Location 18,871,660 – 18,871,751
Length 91
Max. P 0.594453
window11579

overview

Window 9

Location 18,871,660 – 18,871,751
Length 91
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 79.72
Mean single sequence MFE -15.47
Consensus MFE -8.53
Energy contribution -8.50
Covariance contribution -0.03
Combinations/Pair 1.14
Mean z-score -1.88
Structure conservation index 0.55
SVM decision value 0.12
SVM RNA-class probability 0.594453
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18871660 91 + 27905053
CUCACAUUACAC------UCGUAUACUCAAGUAAAUUAAUUAGCUUAAUUUGCAAACAAUCAACUCGAGCUAAUGUGACUUCGCAUUGAACAAAAAC-
.((((((((..(------(((.........(((((((((.....)))))))))............)))).))))))))...................- ( -16.20)
>DroPse_CAF1 560 95 + 1
CUCUAAUUAUACGUGUGCUCGUAC---CGUACAGAUUAAUUAGCUUAAUUUGCAAACAAUCAACUUGAGCUAAUGCGGCUUCGCAUUGAACAAAAAGC
...(((((.((((.(((....)))---))))..)))))((((((((((.(((........))).))))))))))(((....))).............. ( -19.80)
>DroEre_CAF1 540 81 + 1
CUCACAUUA----------------CCCAGGUAAAUUAAUUAGCUUAAUUUGCAAACAAUCAACUCGAGCUAAUGUGACUUCGCAUUGAACAAAAAC-
.((((.(((----------------(....))))....(((((((..(.(((........))).)..)))))))))))...................- ( -14.30)
>DroYak_CAF1 547 91 + 1
CUCACAUUACAC------UCAUAUACUCGGGUAAAUUAAUUAGCUUAAUUUGCAAACAAUCAACUCGAGCUAAUGUGACUUCGCAUUGAACAAAAAC-
............------.......(((((((..(((..((.((.......))))..)))..))))))).(((((((....))))))).........- ( -15.10)
>DroAna_CAF1 2931 82 + 1
CCCUCAUUACAA------UUAUA--------CAAAUUAAUUAGCUUAAUUUACAAACAAUCAACUGGGGCUAAUGCGACUU-GCAUUGAACAAAAAG-
.(((((......------.....--------.(((((((.....))))))).............))))).((((((.....-)))))).........- (  -9.41)
>DroPer_CAF1 560 95 + 1
CUCUAAUUAUACGAGUGCUCGUAC---CGUACAGAUUAAUUAGCUUAAUUUGCAAACAAUCAACUUGAGCUAAUGUGGCUUCGCAUUGAACAAAAAGC
.........(((((....))))).---.((.(((....((((((((((.(((........))).))))))))))(((....))).))).))....... ( -18.00)
>consensus
CUCACAUUACAC______UCGUA____CGGGCAAAUUAAUUAGCUUAAUUUGCAAACAAUCAACUCGAGCUAAUGUGACUUCGCAUUGAACAAAAAC_
......................................((((((((...(((........)))...))))))))(((....))).............. ( -8.53 =  -8.50 +  -0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:50 2006