Locus 7155

Sequence ID 3R_DroMel_CAF1
Location 18,857,556 – 18,857,674
Length 118
Max. P 0.588064
window11575

overview

Window 5

Location 18,857,556 – 18,857,674
Length 118
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 83.16
Mean single sequence MFE -32.19
Consensus MFE -23.02
Energy contribution -23.68
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.73
Structure conservation index 0.71
SVM decision value 0.11
SVM RNA-class probability 0.588064
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18857556 118 - 27905053
GCCGUUAAUGAUGCGUGAGCCCAAAAGACCAAGACCAUCGCAACAUUACAUGUUGCAACCCCAAGAGGCACAGACGACGUGUCGCAUGUAACGCCUCAAUGGCAUCCUGAUUGAAAAC
((((((......((....))...................(((((((...)))))))........((((((((..(((....)))..)))...)))))))))))............... ( -32.80)
>DroSec_CAF1 82406 101 - 1
GCCGUUAAUGAUGCGUGAGCC--------------CAUCGCAACAUUACAUGUUGCAACCCCAAGAGGCACAGA---CGUGUCGCAUGUAACGCCUCAAUGGCAUCCUGAUUGAAAAC
((((((...(((((....)).--------------.)))(((((((...)))))))........(((((....(---((((...)))))...)))))))))))............... ( -32.30)
>DroSim_CAF1 86085 101 - 1
GCCGUUAAUGAUGCGUGAGCC--------------CAUCGCAACAUUACAUGUUGCAACCCCAAGAGGCACAGA---CGUGUCGCAUGUAACGCCUCAAUGGCAUCCUGAUUGAAAAC
((((((...(((((....)).--------------.)))(((((((...)))))))........(((((....(---((((...)))))...)))))))))))............... ( -32.30)
>DroEre_CAF1 84927 115 - 1
GCCGUUAAUGAUGCGUGGAUCCAAAAGACCGAGACCAUUGCAACAUUACAAGUUGCAACCCCAAGGGGCACAGA---CGUGUCGCAUGUAACGCCUCAAUGGCAUUCUGAUUGAAAAC
(((((...(((.((((.....((...(((((......(((((((.......)))))))(((....)))......---)).)))...))..)))).)))))))).(((.....)))... ( -31.70)
>DroYak_CAF1 87750 115 - 1
GCCGUUAAUGAUGCGUGGGCCCAAAAGAGCGAGACCAUUGCAACAUUACAAGUUGCAACCCCAAGGGGCACAGA---CGUGUCGCUUGUAACGCCUCAAUGGCAUCCUGAUUGAAAAC
(((((...(((.((((..((......((((((.((..(((((((.......)))))))(((....)))......---.)).)))))))).)))).))))))))............... ( -37.10)
>DroAna_CAF1 85988 95 - 1
GCCGUUAAUGAUGCGUGGCCCAAA-----------------AACACGACCAG-UGCAACCCCAA--GGCCCAGA---CGUGUCGCUCGAAACGCCUCAAUGGCGGCCUGAUUGAAAAC
(((((((.(((.((((((((....-----------------..(((.....)-)).........--))))..((---....)).......)))).))).)))))))............ ( -26.96)
>consensus
GCCGUUAAUGAUGCGUGAGCCCAA___________CAUCGCAACAUUACAAGUUGCAACCCCAAGAGGCACAGA___CGUGUCGCAUGUAACGCCUCAAUGGCAUCCUGAUUGAAAAC
(((((...(((.((((.......................(((((.......)))))..........(((((.......))))).......)))).))))))))............... (-23.02 = -23.68 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:46 2006