| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,849,563 – 18,849,669 |
| Length | 106 |
| Max. P | 0.522960 |
| Location | 18,849,563 – 18,849,669 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 82.10 |
| Mean single sequence MFE | -23.72 |
| Consensus MFE | -17.08 |
| Energy contribution | -17.48 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.72 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.522960 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18849563 106 - 27905053 UCCAC-C---UUUUUGU-----UUUUCCAUUACAGUUUCCCGGCUGCAAUAAAGCAUUCUCGCGUUUGGAAAAUUUGAAAAUUCAUCAACGCUCGCACACGGGCGAGCGGCCUUA .....-.---((((...-----(((((((...((((......)))).......((......))...)))))))...)))).........(((((((......)))))))...... ( -25.80) >DroVir_CAF1 63133 103 - 1 ---AA-U---UUUAUCA-----CUUUUCAUUACAGUUUCCGGGAUGCAAUAAAGCAUUUUCACGUUUGGAAAAUUUGAAAAUUCAUCAGCGUUCGCACACAGGCGAGCGGCCUUA ---..-.---.......-----.((((((......((((((((((((......))))).......)))))))...))))))........(((((((......)))))))...... ( -22.91) >DroGri_CAF1 80608 104 - 1 ---AAUU---CUUGCCA-----CUUUUCAUUACAGUUUCCGGAAUGCAAUAAGGCAUUUUCACGUCUGGAAAAUUUGAAAAUUCAUCAACGUUCGCACACAGGCGAACGGCCUUA ---....---...(((.-----.((((((......((((((((((((......)))).......))))))))...)))))).........((((((......))))))))).... ( -28.51) >DroWil_CAF1 86792 110 - 1 UCUCU-C---UCUUUG-GAUCCUUUUUUAUUACAGUUUCCCGGCUGCAAUAAAGCAUUUUCGCGUUUGGAAAAUUUGAAAAUUCAUCAGCGUUCGCAUACUGGCGAACGGCCCUA .....-.---.....(-(.......((((((.((((......)))).))))))(((((((((.(((.....))).))))))).......(((((((......))))))))))).. ( -23.20) >DroMoj_CAF1 100596 103 - 1 ---AU-U---UUUACCA-----CUUUUCAUUACAGUUUCCGGGCUGCAAUAAAGCCUUUUCACGUCUCGAAAAUUUGAAAAUUCAUCAACGCUCGCACACAGGUGAGCGGCCUUA ---..-.---.......-----.((((((...........(((((.......)))))((((.......))))...))))))........(((((((......)))))))...... ( -21.70) >DroAna_CAF1 78700 109 - 1 GUCCU-UUUUUUUUUGU-----UUUUCCAUUACAGUUUCCCGGCUGCAAUAAAGCAUUUUCGCGUUUGGAAAAUUUGAAAAUUCAUCAACGCUCGCACACGGGAGAACGGCCUUA (((..-.......((((-----.........))))((((((((((.......)))......(((((..(((..........)))...))))).......)))))))..))).... ( -20.20) >consensus ___AU_U___UUUUUCA_____CUUUUCAUUACAGUUUCCCGGCUGCAAUAAAGCAUUUUCACGUUUGGAAAAUUUGAAAAUUCAUCAACGCUCGCACACAGGCGAACGGCCUUA .......................((((((......(((((.((((((......))).......))).)))))...))))))........(((((((......)))))))...... (-17.08 = -17.48 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:45 2006