| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,848,999 – 18,849,101 |
| Length | 102 |
| Max. P | 0.646648 |
| Location | 18,848,999 – 18,849,101 |
|---|---|
| Length | 102 |
| Sequences | 4 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 83.89 |
| Mean single sequence MFE | -19.95 |
| Consensus MFE | -13.98 |
| Energy contribution | -14.85 |
| Covariance contribution | 0.87 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.646648 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18848999 102 + 27905053 UGUUAGUCCCUGCCUCUGUACUCCUGCCCCA---CCGUACUCC--CUUCCGUAUUCCGAUUGCGAUUCCUAUUCGGAUUCGUAGUCCUAUUCCAGCUGCUGUUACUU ....(((..(.((..(((.............---..((((...--.....))))...((((((((.(((.....))).))))))))......)))..)).)..))). ( -20.50) >DroSec_CAF1 73876 103 + 1 UGUUAGUCCCUGCCCCUGU--UCUUGCCCCACCACCGUACACC--CUUCCGUAUUCCGAUUGCGAUUCCUAUUCGGAUUCGUAGUCCUAUUCCAGCUGCUGUUACUU ....(((..(.((..(((.--...............((((...--.....))))...((((((((.(((.....))).))))))))......)))..)).)..))). ( -20.60) >DroSim_CAF1 77307 103 + 1 UGUUAGUCCCUGCCCCUGU--UCCUGCCCCACCGCCGUACGCC--CUUCUGUAUUCCGAUUGCGAUUCCUAUUCGGAUUCGUAGUCCUAUUCCAGCUGCUGUUACUU ....(((..(.((..(((.--............(..(((((..--....)))))..)((((((((.(((.....))).))))))))......)))..)).)..))). ( -21.10) >DroEre_CAF1 73911 91 + 1 UGUUGC-CCCAGCCCCUG---CCACGCCC----------CUCCUGAUGCCG--UUCCGAUUCCGAUUCCUAUUCGGAUUCGUAUUCCUAUUCCAGCUGCUGUUACUU ......-..((((..(((---....((..----------(....)..))..--...(((.(((((.......))))).)))...........)))..))))...... ( -17.60) >consensus UGUUAGUCCCUGCCCCUGU__UCCUGCCCCA___CCGUACUCC__CUUCCGUAUUCCGAUUGCGAUUCCUAUUCGGAUUCGUAGUCCUAUUCCAGCUGCUGUUACUU ...........((..(((..................((((..........))))...((((((((.(((.....))).))))))))......)))..))........ (-13.98 = -14.85 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:44 2006