Locus 7149

Sequence ID 3R_DroMel_CAF1
Location 18,841,055 – 18,841,148
Length 93
Max. P 0.609795
window11566

overview

Window 6

Location 18,841,055 – 18,841,148
Length 93
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 79.86
Mean single sequence MFE -31.25
Consensus MFE -16.57
Energy contribution -17.60
Covariance contribution 1.03
Combinations/Pair 1.05
Mean z-score -2.02
Structure conservation index 0.53
SVM decision value 0.15
SVM RNA-class probability 0.609795
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18841055 93 - 27905053
---CGCUCCCUGAAUGCAGUCCAUCCGGACUUCAUUAUCGAGCUGACCAACUCGGACGC--CAAAUGACACAAAGUCAUUGGAGCGUUCAGGAGUGAU
---((((((.((((((((((((....)))))......(((((........)))))...(--(((.((((.....)))))))).))))))))))))).. ( -37.40)
>DroSec_CAF1 65863 89 - 1
-------CCCUGGAUGCAGUCCGCCCGGACUUCAUUAUCGAGCUGGCCAACUCGGACGC--CAAAUGACACAAAGUCAUUGGAGCGUUCAGGAGUGAU
-------.(((((((((.(((((.((((.(((.......)))))))......))))).(--(((.((((.....)))))))).)))))))))...... ( -34.20)
>DroSim_CAF1 69345 96 - 1
CGAAGCCCCCUGGAUGCAGUCCGCCCGGACUUCAUUAUCGAGCUGGCCAACUCGGACGC--CAAAUGACACAAAGUCAUUGGAGCGUUCAGGAGUGAU
........(((((((((.(((((.((((.(((.......)))))))......))))).(--(((.((((.....)))))))).)))))))))...... ( -34.20)
>DroEre_CAF1 66015 98 - 1
CGAAACCCCCUGGAUGCAGUGCGCCCGGACUUCAUUAUCGAGCUGCCCAAGUCGGACGGCGCAAAUGACACAAAGUCAUUGGAGCGUUCAGGAGUGAU
........(((((((((..(((((((.(((((................))))).)..))))))((((((.....))))))...)))))))))...... ( -34.69)
>DroYak_CAF1 70227 81 - 1
CGAAACCCCCUG---------------GACUUCAUUAUCGAGCUGCACAACUCGGACGC--CAAAUGACACAAAGUCAUUGGAGCGUUCAGGAGUGAU
........((((---------------(((.......(((((........)))))..((--(.((((((.....)))))).).)))))))))...... ( -23.70)
>DroAna_CAF1 70017 94 - 1
UGGACUUCUAUUGU--CGACCAGGCCGAGGUUCAUUAUCGAAGAGCACAACCCCGAGGC--CAAAUGACACAAAGUCAUUGGAGCGUUCAGGAGUGAU
((((((((....((--(.....))).)))))))).............((..((.(((((--(.((((((.....)))))).).)).))).))..)).. ( -23.30)
>consensus
CGAAACCCCCUGGAUGCAGUCCGCCCGGACUUCAUUAUCGAGCUGCCCAACUCGGACGC__CAAAUGACACAAAGUCAUUGGAGCGUUCAGGAGUGAU
............................(((((......(((........)))((((((....((((((.....))))))...)))))).)))))... (-16.57 = -17.60 +   1.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:38 2006