| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,838,609 – 18,838,706 |
| Length | 97 |
| Max. P | 0.710244 |
| Location | 18,838,609 – 18,838,706 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 84.62 |
| Mean single sequence MFE | -23.87 |
| Consensus MFE | -15.44 |
| Energy contribution | -15.00 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.41 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.710244 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18838609 97 + 27905053 AUUAUGCACAGCGCAGACCAACUGCAUUGGUAACUAA-----------------ACUGCAUUGGUAACUCAAUCUGCGCCUGAACUCCAGUUACAAAAUUAAGAAUGCAAUAGA ....((((..(((((((((((.((((((((...))))-----------------..))))))))........)))))))(((.....)))...............))))..... ( -22.20) >DroSec_CAF1 63429 97 + 1 AUUAGGCACAGCGCAGACCAACUGCAUUGGUAACUCA-----------------AAUGCAUUGGUAACUCAAUCUGCGCCAGAACUCCAGUUACAAAACUAAGAAUGCAAUAGA .....(((..(((((((((((.((((((.........-----------------))))))))))........))))))).........((((....)))).....)))...... ( -23.30) >DroSim_CAF1 66889 113 + 1 AUUAUGCAUAA-GCAGACCAACUGCAUUGGUAACUCAACUGCAUUGGUAACUCAACUGCAUUGGUAACUCAAUCUGCGCCAGAACUCCAGUUACAAAACUAAGAAUGCAAUAGA ....(((((..-(((((((((.((((((((....)))).))))))))).......))))....((((((...((((...)))).....))))))..........)))))..... ( -26.11) >consensus AUUAUGCACAGCGCAGACCAACUGCAUUGGUAACUCA_________________ACUGCAUUGGUAACUCAAUCUGCGCCAGAACUCCAGUUACAAAACUAAGAAUGCAAUAGA .....((((((.((((.....)))).)))((((((......................(((((((....))))..)))....(.....)))))))...........)))...... (-15.44 = -15.00 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:37 2006