Locus 7147

Sequence ID 3R_DroMel_CAF1
Location 18,837,273 – 18,837,386
Length 113
Max. P 0.924917
window11564

overview

Window 4

Location 18,837,273 – 18,837,386
Length 113
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 87.39
Mean single sequence MFE -21.72
Consensus MFE -19.64
Energy contribution -19.36
Covariance contribution -0.28
Combinations/Pair 1.04
Mean z-score -1.72
Structure conservation index 0.90
SVM decision value 1.17
SVM RNA-class probability 0.924917
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18837273 113 - 27905053
AAAUAAACUGAACAAGACCUGCAAAUUAAGUGUUAAAUUGUAUAUUUAUACAGUUUGGUUACGGUUUUGGCACAAAUCGUAAUCAGAUAAAAUCGCUAUUAGCAGUAAUGCAC
..................((((.(((..((((......(((((....)))))(((((((((((((((......))))))))))))))).....))))))).))))........ ( -24.80)
>DroSec_CAF1 62264 94 - 1
-----------------ACUGCAAAUUAAGUGUUAAAUUGUAUAUUUAUACAGUUUGGUUACGGA--AAGCACAAAUCGUAAUCAGAUAAAAUCGCUAUUAGCAGUAAUGCAC
-----------------(((((.(((..((((......(((((....)))))((((((((((((.--.........)))))))))))).....))))))).)))))....... ( -21.70)
>DroSim_CAF1 65638 111 - 1
AAAUAAACUGAACAAGACCUGCAAAUUAAGUGUUAAAUUGUAUAUUUAUACAGUUUGGUUACGGC--CAGCACAAAUCGUAAUCAGAUAAAAUCGCUAUUAGCAGUAAUGCAC
..................((((.(((..((((......(((((....)))))((((((((((((.--.........)))))))))))).....))))))).))))........ ( -20.50)
>DroEre_CAF1 62440 111 - 1
AAAUAAAAUGAACAAGACCUGCAAAUGAAGUGUUAAAUUGUAUAUUUACACAGUUUGGUUACAGC--CUGCUCAAAUUGUAAUCAGAUGAAAUCGCUAUUAGCAGUAAUGCAC
....................((.......((((.((((.....)))))))).((((((((((((.--.........))))))))))))......)).....(((....))).. ( -19.90)
>DroYak_CAF1 66465 111 - 1
AUAUGAACUGAACAAGACCUGCAAAUUAAGUGUUAAAUUGUAUAUUUAUACAGUUUGGUUACAGC--CUGCUCAAAUUGUAAUCAGAUAAAAUCGCUAUUAGCAGUAAUGCAC
.......((((((((.....(((...........(((((((((....)))))))))(((....))--)))).....))))..))))...............(((....))).. ( -21.70)
>consensus
AAAUAAACUGAACAAGACCUGCAAAUUAAGUGUUAAAUUGUAUAUUUAUACAGUUUGGUUACGGC__CAGCACAAAUCGUAAUCAGAUAAAAUCGCUAUUAGCAGUAAUGCAC
..................((((.(((..((((......(((((....)))))((((((((((((............)))))))))))).....))))))).))))........ (-19.64 = -19.36 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:36 2006