| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,836,975 – 18,837,075 |
| Length | 100 |
| Max. P | 0.878928 |
| Location | 18,836,975 – 18,837,075 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 82.16 |
| Mean single sequence MFE | -31.95 |
| Consensus MFE | -17.35 |
| Energy contribution | -19.14 |
| Covariance contribution | 1.78 |
| Combinations/Pair | 1.25 |
| Mean z-score | -3.34 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.878928 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18836975 100 - 27905053 CA---ACGACGAGUGUG---UUGGCA---CCGCACUAGGGUGUCAAACGGCGAUAAACAUAAACAAUGGGGCCCUAAAUAAAUAAUUGGGUCUAAAACCGGCUCGUCGA ..---.((((((((...---((((((---((.......)))))))).(((.......(((.....)))((((((.............))))))....))))))))))). ( -37.02) >DroSec_CAF1 61966 100 - 1 CA---ACGACAAGUGUG---UUGGCA---ACGCACGAGGGUGUCAAACGGCGAUAAACAUAAACAAUGGGGCCCUAAAUAAAUAAUCGGGCCUAAAACCGGCUCGUCGA ..---..((((..((((---(.(...---.))))))....))))...((((((....(((.....)))((((((.............)))))).........)))))). ( -30.52) >DroSim_CAF1 65340 100 - 1 CA---ACGACGAGUGUG---UUGGCA---ACGCACGAGGGUGUCAAACGGCGAUAAACAUAAACAAUGGGGCCCUAAAUAAAUAAUCGGGCCUAAAACCGGCUCGUCGA ..---.(((((((((((---(.(...---.)))))...((((((....))).................((((((.............))))))...))).)))))))). ( -34.72) >DroEre_CAF1 62146 97 - 1 CAGC------GAGUGUG---UUGGCA---CCGCACAAGGGUGUCAAACUGCGAUAAACAUAAACAAUGGGGCCCUAAAUAAAUAAUCGGCCCUAAAACCAGCUCGUCGA (.((------((((((.---((((((---((.......))))))))...))...............(((((((..............)))))))......)))))).). ( -30.34) >DroYak_CAF1 66151 109 - 1 CAGCAACGACGAGUGUGUGUUUGGCACCACCACAUAAGGGUGUCAAACUGCGAUAAACAUAAACAAUGGGGCCCUAAAUAAAUAAUCGGGCCUAAAACCAGCUCGUCGA ......(((((((((((.((((((((((..........))))))))))))).................((((((.............)))))).......)))))))). ( -39.32) >DroAna_CAF1 66091 89 - 1 CA---AACAUG------------ACA---GUCUAUGAAGGUGUCAGGCCACGAUAAACAUACAUAAUGGGGCCCUAAAUAAAUAA-CGAGCCUA-AACCAGCUCGUCCA ..---....((------------(((---.(((....))))))))((((.(.((...........)).)))))...........(-(((((...-.....))))))... ( -19.80) >consensus CA___ACGACGAGUGUG___UUGGCA___CCGCACGAGGGUGUCAAACGGCGAUAAACAUAAACAAUGGGGCCCUAAAUAAAUAAUCGGGCCUAAAACCAGCUCGUCGA ......((((((((.........((......((((....))))......)).................((((((.............)))))).......)))))))). (-17.35 = -19.14 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:35 2006