Locus 7145

Sequence ID 3R_DroMel_CAF1
Location 18,832,879 – 18,832,970
Length 91
Max. P 0.867102
window11562

overview

Window 2

Location 18,832,879 – 18,832,970
Length 91
Sequences 6
Columns 91
Reading direction forward
Mean pairwise identity 89.38
Mean single sequence MFE -17.78
Consensus MFE -15.37
Energy contribution -15.51
Covariance contribution 0.14
Combinations/Pair 1.21
Mean z-score -1.95
Structure conservation index 0.86
SVM decision value 0.85
SVM RNA-class probability 0.867102
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18832879 91 + 27905053
UUUAGGUCAAUUGAAUUGUAAUAAAGUACACAUAAUGUGUCAAGAACGAAAUUGCGUUAUUUCGAUUCAAUUGCAUUUAAUAAAGUAAACA
.(((((((((((((((((.(((...(.((((.....)))))...((((......))))))).))))))))))).))))))........... ( -19.70)
>DroSec_CAF1 57919 91 + 1
UUUAGGUCAAUUGAAUUGUAAUAAAGUACACAUAAUGUGUCAAGAACGAAAUUGCGUUAUUUAGAUUCAAUUGCAUUUAAUAAAGUAAACA
.((((((((((((((((........(.((((.....)))))...((((......)))).....)))))))))).))))))........... ( -17.50)
>DroSim_CAF1 61281 91 + 1
UUUAGGUCAAUUGAAUUGUAAUAAAGUACACAUAAUGUGUCAAGAACAAAAUUGCGUUAUUUCGAUUCAAUUGCAUUUAAUAAAGUAAACA
.(((((((((((((((((.(((((.((((((.....)))).............)).))))).))))))))))).))))))........... ( -18.81)
>DroEre_CAF1 58002 91 + 1
UUUGGGUCAAUUGAAUUGUAAUAAAGCACACAUAAUGUGUCAAGAACGAAAUUGCGUUAUUUCGAUUCAAUUGCAUUUAAUAAAGUGAACU
.(((((((((((((((((.(((((.((((((.....)))((......))...))).))))).))))))))))).))))))........... ( -21.10)
>DroYak_CAF1 61911 91 + 1
UUUAGGUCAAUUGAAUUGUAAUAAAGUGCACAUAAUGUGUCAAGAACGAAAUUGCGUUAUUUCGAUUCAAUUGGAUUUAAUAAAGUAAACU
.(((((((((((((((((.(((.....((((.....))))....((((......))))))).)))))))))).)))))))........... ( -19.30)
>DroAna_CAF1 60950 91 + 1
UUUGCGUCAAUUUAAUUGCAAUAAUGUAAAUGCAAAGUGCGAGCGAUGAAAUUACCUUAUUUUGAUUCAAUUUCAUUUAAUAAAAUAAACA
...((.((.......(((((....)))))..((.....))))))(((((((((...............))))))))).............. ( -10.26)
>consensus
UUUAGGUCAAUUGAAUUGUAAUAAAGUACACAUAAUGUGUCAAGAACGAAAUUGCGUUAUUUCGAUUCAAUUGCAUUUAAUAAAGUAAACA
.(((((((((((((((((.(((((.((((((.....)))).............)).))))).))))))))))).))))))........... (-15.37 = -15.51 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:34 2006