| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,830,484 – 18,830,578 |
| Length | 94 |
| Max. P | 0.700865 |
| Location | 18,830,484 – 18,830,578 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 82.33 |
| Mean single sequence MFE | -18.32 |
| Consensus MFE | -12.73 |
| Energy contribution | -12.53 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.700865 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18830484 94 + 27905053 GCACAACUAUUGAAAAUCCAGCAAAACAAAAUCCCUUAAUAACUUAAUGGACUUGUGUGCGUGUUUGCAUACG----------CCGC------CUACGCUCACACACACA ...............................(((.((((....)))).)))..((((((.((((..((.....----------..))------..)))).)))))).... ( -17.50) >DroSec_CAF1 55523 94 + 1 GCACAACUAUUGAAAAUCCAGCAAAACAAAAUCCCUUAAUAACUUAAUGGACUUGUGUGCGUGUUUGCAUACG----------CCGC------CUACGCUCACACACACA ...............................(((.((((....)))).)))..((((((.((((..((.....----------..))------..)))).)))))).... ( -17.50) >DroEre_CAF1 55662 95 + 1 GCACAACUAUUGAAAAUCCUGCAAAACAAAAUCCCUUAAUAACUUAAUGGACUUGUGUGCGUGUUUGCAUACAUGAGUAC-----GC------CCACGCUCACACA---- (((................))).........(((.((((....)))).)))..((((((.((((..((.(((....))).-----))------..)))).))))))---- ( -19.19) >DroYak_CAF1 59396 99 + 1 GCACAACUAUUGAAAAUCCAGCAAAACAA-AUCCCUUAAUAACUUAAUGGACAUGUGUGCGUGUUUGCAUACAUGAGCACA--CCGC------CCACGCUCACACACA-- ((........((......))((.......-.(((.((((....)))).)))((((((((((....)))))))))).))...--....------....)).........-- ( -19.90) >DroAna_CAF1 58671 105 + 1 GCACAUCUAUUGGAAAUCUAGCAAAACAAAAUCCCUUAAUAACUUAAUGGACUUGUGUUCGUGUUUGCAUACAUAAAUAC---CCGCAAACACCCAUGCACACUCAAA-- .........((((..................(((.((((....)))).)))..(((((..((((((((............---..))))))))....))))).)))).-- ( -18.14) >DroPer_CAF1 73558 104 + 1 GCACUAGUAUUGAAAAUCAAGCAAAACAAAAUCCCUUAAUAACUUAAUGGACUUGUGUGUGUUUUUGCAUACAUAAAUAGAACCCAA------ACACGCUCAGACACGCA ((.......(((.....)))((.........(((.((((....)))).))).((((((((((....))))))))))...........------....))........)). ( -17.70) >consensus GCACAACUAUUGAAAAUCCAGCAAAACAAAAUCCCUUAAUAACUUAAUGGACUUGUGUGCGUGUUUGCAUACAU_A_UAC___CCGC______CCACGCUCACACACA__ ....................((.........(((.((((....)))).)))..((((((((....))))))))........................))........... (-12.73 = -12.53 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:33 2006