Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,525,481 – 2,525,598 |
Length | 117 |
Max. P | 0.528214 |
Location | 2,525,481 – 2,525,598 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.47 |
Mean single sequence MFE | -26.42 |
Consensus MFE | -18.02 |
Energy contribution | -17.66 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.15 |
Mean z-score | -1.75 |
Structure conservation index | 0.68 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.528214 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2525481 117 - 27905053 AUAACAAAAAAACGUAUGGACUCGGCUAC---CACAUCCCACAUCAACACCCAAUUGUUGACUAUGAACACCCGGAUCCGUCCAAGAACUAAGAGCUAAGGCUCCAUCGGGGCUAGCACC .............(.(((((..(((....---..(((......((((((......))))))..))).....)))..))))).)...........(((..((((((...)))))))))... ( -25.20) >DroSec_CAF1 54843 120 - 1 AUAACAAAAAAACCUAUGGACUCGGCUACCACCACAUCCCACAUCAGCACCCAGUUGAUGACUAUGAACACCCGGAUCCGUCCAAGAACUAAAAGCUAGGGCUCCUUAAGGGCUAGCACC ................(((((..((......))..((((..(((((((.....))))))).....(......)))))..)))))..........(((..(((((.....))))))))... ( -25.90) >DroSim_CAF1 53784 120 - 1 AUAACAAAAAAACCUAUGGACUAGGCAACCACCACAUCCCACAUCAGCACCCAGUUGUUGACUAUGAACACCCGGAUCCGUCCAAGAACUUAAAGCUAGGGCUCCAUCAGGGCUAGCACC ................(((((..((......))..((((....((((((......))))))....(......)))))..)))))..........(((..(((((.....))))))))... ( -22.30) >DroEre_CAF1 54579 115 - 1 AUAACAAAAACCCUCAUGGAUUUGGCUAC---CACAUCCCAAAUCAACACCGUCUUGUUGACUAUGACAACCCGGAUCCGUCCGAGAACCAAGAGCCA-GGCUCCAU-AGGGCUAGCACC ..........((((.((((((((((((..---...........((((((......))))))...........((((....)))).........)))))-)).)))))-))))........ ( -30.90) >DroYak_CAF1 56113 115 - 1 AUAACAAAAAA-CUCAUGGAUUUGGCUUC---CACAUCCCAAAUCAACACCCAGUUGUUGACUAUGACAACCCGGAUCCGUCUGAGAACUAAGAGCUA-GGCUCCAUUAGGGCUAGCACC ...........-(((((((((((((....---..(((......((((((......))))))..))).....)))))))))..))))........((((-(.((......)).)))))... ( -27.80) >consensus AUAACAAAAAAACCUAUGGACUCGGCUAC___CACAUCCCACAUCAACACCCAGUUGUUGACUAUGAACACCCGGAUCCGUCCAAGAACUAAGAGCUA_GGCUCCAUCAGGGCUAGCACC ................(((((..((..........((((....((((((......))))))....(......))))))))))))..........(((..(((((.....))))))))... (-18.02 = -17.66 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:03 2006