Locus 7138

Sequence ID 3R_DroMel_CAF1
Location 18,811,055 – 18,811,148
Length 93
Max. P 0.659299
window11551

overview

Window 1

Location 18,811,055 – 18,811,148
Length 93
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 79.25
Mean single sequence MFE -27.02
Consensus MFE -15.90
Energy contribution -15.93
Covariance contribution 0.03
Combinations/Pair 1.06
Mean z-score -1.73
Structure conservation index 0.59
SVM decision value 0.26
SVM RNA-class probability 0.659299
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18811055 93 - 27905053
---AGCCAGAGCCACAAAACUCAUUGCCGCAACUUACACCGCUAAUGGCGCGCAUAAUCAAACGCCAUGGGUGGUGCAUACUGC-------ACUGCAUGCGC-U
---((((((((........)))..(((.(((.....(((((((.((((((............)))))).))))))).....)))-------...))))).))-) ( -28.50)
>DroPse_CAF1 50618 87 - 1
---AGCCGCAGCCACAAAACUCAUUGCCGCAACUUACACCGCUAAUGGCGCGCAUAAUCAAACGCCAUGGGUGGUGC------C-------ACCGAAUGCAC-U
---....(((((..(((......)))..))......(((((((.((((((............)))))).))))))).------.-------......)))..-. ( -24.90)
>DroWil_CAF1 36266 83 - 1
-----------CCACAAAACUCAUUGCCGCAACUUACACCGCUAAUGGCGCGCAUAAUCAAACGCCAUGGGUGGCGA-UG--GC-------AGUGAAUGUGAAU
-----------.((((....(((((((((.......(.(((((.((((((............)))))).))))).).-))--))-------))))).))))... ( -28.50)
>DroYak_CAF1 39046 103 - 1
AGCAGCCAGAGCCACAAAACUCAUUGCCGCAACUUACACCGCUAAUGGCGCGCAUAAUCAAACGCCAUGGGUGGUGGAUGGUGGAUGGUGCAGCGCAUGCAG-U
.(((.((((((........)))....((((......(((((((.((((((............)))))).)))))))....)))).)))))).((....))..-. ( -35.70)
>DroMoj_CAF1 39459 89 - 1
UGCAGCCACAGCCACAAAACUCAUUGCUGCAACUUACACCGCUAAUGGUGCGCAUAAUCAAACGCCAUGGGUGGCAC----UGA-------ACUGC---CUU-U
((((((...((........))....)))))).......(((((.((((((............)))))).)))))...----...-------.....---...-. ( -20.90)
>DroAna_CAF1 37665 85 - 1
---AGCCCGAGCCACAAAACUCAUUGCCGCAACUUACACCGCUAAUGGCGCGCAUAAUCAAACGCCAUGGGUGGCG------GU-------ACUGGAUGU---A
---...(((((........)))..((((((......((((....((((((............)))))).)))))))------))-------)..))....---. ( -23.60)
>consensus
___AGCCAGAGCCACAAAACUCAUUGCCGCAACUUACACCGCUAAUGGCGCGCAUAAUCAAACGCCAUGGGUGGCGC_____GC_______ACUGCAUGCAC_U
..........((..(((......)))..))........(((((.((((((............)))))).))))).............................. (-15.90 = -15.93 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:24 2006