| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,805,794 – 18,805,902 |
| Length | 108 |
| Max. P | 0.882481 |
| Location | 18,805,794 – 18,805,902 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 81.25 |
| Mean single sequence MFE | -14.47 |
| Consensus MFE | -9.12 |
| Energy contribution | -9.27 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.50 |
| Mean z-score | -2.59 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.882481 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18805794 108 + 27905053 ACCAAAGAAUUUUCAUUAA--AAUUUUCAUUUAGUUGCGCAAUUAUUUUUGUGCAGCCAUUUUAAUAACACUAAUUUACCUUCAAU--UCCCAACU--CUUUUU-CGAGUCA----CAC .....((((((((....))--))))))......(((((((((......))))))))).............................--.....(((--(.....-.))))..----... ( -15.70) >DroVir_CAF1 22706 103 + 1 ACCAAAGAAUUUUCAUUAA--AAUUCUCAUUUAGCUGCGCAAUUAUUUCAGUGCAGCAAUUUUAAUAACACUAAUUUACCUUCAGU--UUUCAACU--CGCUCUUC----------CUA .....((((((((....))--))))))......(((((((..........))))))).............................--........--........----------... ( -15.30) >DroGri_CAF1 28709 101 + 1 ACCAAAGAAUUUUCAUUAA--AAUUCUCAUUUAGUUGCGCAAUUAUUUCUGGGCAGCAAUUUUAAUAACACUAAUUUACCUUCAGU--UUUCAACU--CGCUCCUC----------C-- .....((((((((....))--))))))......(((((.((........)).))))).............................--........--........----------.-- ( -12.70) >DroWil_CAF1 31791 101 + 1 ACCAAAGAACUUUCAUUAA--AAUUUUCAUUUAGUUGCGCAAUUAUUUUUGUGCAGCAAUUUUAAUAACACUAAUUUACCUUCAAU--UUCCAACU--CAUUUU------------CAC ..............(((((--((((........(((((((((......))))))))))))))))))....................--........--......------------... ( -14.50) >DroMoj_CAF1 34483 105 + 1 ACCAAAGCAUUUUCAUUAA--AACUCUCAUUAAGUUGCGCAAUUAUUCCAAUGUAACUAUUUUAAUAACACUAAUUUACCUUCAGC--UUGCAGCUCUCGCUGUUG----------CUC ...................--...........(((((((............))))))).........................(((--..(((((....))))).)----------)). ( -13.30) >DroPer_CAF1 43661 117 + 1 ACCAAAGAAUUUUCAUUAAAAAAUGUUCAUUUAGUUGCACAAUUAUUUUUGUGCAGCAAUUUUAAUAACACUAAUUUACCUUCAAUUUUCUCAACU--CUUUUUCCGUGCCACACUCAC ...(((((.....((((....))))........(((((((((......)))))))))......................................)--))))....(((...))).... ( -15.30) >consensus ACCAAAGAAUUUUCAUUAA__AAUUCUCAUUUAGUUGCGCAAUUAUUUCUGUGCAGCAAUUUUAAUAACACUAAUUUACCUUCAAU__UUUCAACU__CGCUUUUC__________CAC .................................((((((((........)))))))).............................................................. ( -9.12 = -9.27 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:19 2006