Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 18,777,593 – 18,777,701 |
Length | 108 |
Max. P | 0.991114 |
Location | 18,777,593 – 18,777,701 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 92.65 |
Mean single sequence MFE | -28.66 |
Consensus MFE | -25.60 |
Energy contribution | -26.22 |
Covariance contribution | 0.61 |
Combinations/Pair | 1.11 |
Mean z-score | -2.27 |
Structure conservation index | 0.89 |
SVM decision value | 2.25 |
SVM RNA-class probability | 0.991114 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18777593 108 + 27905053 AACUGAGCACACUCAUUACAGACGCGAAUGCAUUUUAAAAGCGGUAUUAAUAAUGCAUUACUUUAAGCUGUGAUUAUUUAAUGGCGGCUUAAGGUCGGGAAAAUGUCA ...((((....)))).....((((..((((((((((((........)))).))))))))((((((((((((.(((....))).))))))))))))........)))). ( -29.60) >DroSec_CAF1 3185 108 + 1 AACUGAGCACACUCAUUACAGACGCGAAUGCAUUUUAAAAGCGGUAUUAAUAAUGCAUUACUUUAAGCUGUGAUUAUUUAAUGGCGGCUUAAGGUCGGGAAAAUUUCA ...((((....)))).......(.((((((((((((((........)))).))))))))((((((((((((.(((....))).)))))))))))))).)......... ( -28.30) >DroSim_CAF1 3169 108 + 1 AACUGAGCACACUCAUUACAGACGCGAAUGCAUUUUAAAAGCGGUAUUAAUAAUGCAUUACUUUAAGCUGUGAUUAUUUAAUGGCGGCUUAAGGUCGGGAAAAUGUCA ...((((....)))).....((((..((((((((((((........)))).))))))))((((((((((((.(((....))).))))))))))))........)))). ( -29.60) >DroEre_CAF1 3123 108 + 1 AACUGAGCACACUCAUUACAGACGCGAGUGCAUUUCAAAAGCGGCAUUAAUAAUGCAUUACUUUAAGCUGUGAUUAUUUAAUGGCGGCUUAAGGUCGGAAAAAUGUCA ...((((....)))).....((((..((((((((.................))))))))((((((((((((.(((....))).))))))))))))........)))). ( -28.43) >DroYak_CAF1 3363 108 + 1 AACUGAGCACACUCAUUACAGACGCGAAUGCAUUUCGAGAGCGGCAUUAAUAAUGCAUUACUUUAAGCUGUGAUUAUUUAAUGGCGGCUUAAGGUCGGGAAAAUGUCA ...((((....)))).....(((((....)).(..(((.....((((.....))))....(((((((((((.(((....))).))))))))))))))..)....))). ( -30.30) >DroAna_CAF1 4307 108 + 1 AAGUGGAGCCACUCAUUAUGGGCGCGUAGGCAUUUUAAAAGCCUUAUUAAUAAUGCAUUACUUUAAGCCGUGAUUAUUUAAUGGCAGCUUAAGGUCAGAAAAAUGUCA .......(((.(.......)))).....((((((((....((.(((....))).))...(((((((((.((.(((....))).)).)))))))))....)))))))). ( -25.70) >consensus AACUGAGCACACUCAUUACAGACGCGAAUGCAUUUUAAAAGCGGUAUUAAUAAUGCAUUACUUUAAGCUGUGAUUAUUUAAUGGCGGCUUAAGGUCGGGAAAAUGUCA ...((((....)))).....((((..((((((((((((........)))).))))))))((((((((((((.(((....))).))))))))))))........)))). (-25.60 = -26.22 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:08 2006