Locus 7129

Sequence ID 3R_DroMel_CAF1
Location 18,770,872 – 18,770,980
Length 108
Max. P 0.523979
window11531

overview

Window 1

Location 18,770,872 – 18,770,980
Length 108
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 81.69
Mean single sequence MFE -30.63
Consensus MFE -13.45
Energy contribution -15.69
Covariance contribution 2.24
Combinations/Pair 1.12
Mean z-score -2.21
Structure conservation index 0.44
SVM decision value -0.02
SVM RNA-class probability 0.523979
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18770872 108 - 27905053
UCCACCUGGCGGCGCUAAAGCGGCAAUAUGCUCAGCAUGUUGCACGUAAAGUGGUGCGAAAAGCACAGUUUGUUGCUUAAAUAAUUUAUCUCGUGCACAAACACAC--AA
..(((...(((.(((....)))(((((((((...))))))))).)))...)))((((.....)))).((((((.((..................))))))))....--.. ( -33.97)
>DroSec_CAF1 29120 108 - 1
UCCAACUGGCGGAGCUAAAGCGGCAAUAUGCUCAGCAUGUUGCAGCUAAAGUGGUGCGAAAAGCACAGUUUGUUGCUUAAAUAAUUUAUCUCGUGCACAAACACAC--AA
......((((...((....)).(((((((((...))))))))).))))..(((((((.....)))).((((((.((..................)))))))).)))--.. ( -33.17)
>DroSim_CAF1 29833 108 - 1
UCCACCUGGCGGCGCUAAAGCGGCAAUAUGCUCAGCAUGUUGCAGCUAAAGUGGUGCGAAAAGCACAGUUUGUUGCUUAAAUAAUUUAUCUCGUGCACAAACACAC--AA
......((((..(((....)))(((((((((...))))))))).))))..(((((((.....)))).((((((.((..................)))))))).)))--.. ( -35.17)
>DroEre_CAF1 29450 107 - 1
UCCACGCGGCAGCGCAAAAGCG-CUGUACCUGCCGCAUGUUGCACGUAAAGUGGUGCGAAAAGCACAGUUUGUUGCUUAAAUAAUUUAUCUCGUGCACAAACACAC--AC
.....((((((((((....)))-)......))))))..............(((((((.....)))).((((((.((..................)))))))).)))--.. ( -32.97)
>DroAna_CAF1 24114 93 - 1
UCCACCG-------U----------UUAUACCCGCCAGUGUACAGGGAAAGUGUUGGGAAAAGCACAGUUUGUUGCUUAAAUAAUUUAUCUCGUUCACAAACACACGGAC
(((.((.-------(----------.(((((......))))).).))...(((((..(((.........(((((.....))))).........)))...)))))..))). ( -17.87)
>consensus
UCCACCUGGCGGCGCUAAAGCGGCAAUAUGCUCAGCAUGUUGCAGGUAAAGUGGUGCGAAAAGCACAGUUUGUUGCUUAAAUAAUUUAUCUCGUGCACAAACACAC__AA
......................(((((((((...))))))))).......(((((((.....)))).((((((.((..................)))))))).))).... (-13.45 = -15.69 +   2.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:05 2006