Locus 7128

Sequence ID 3R_DroMel_CAF1
Location 18,770,719 – 18,770,829
Length 110
Max. P 0.539402
window11530

overview

Window 0

Location 18,770,719 – 18,770,829
Length 110
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 83.00
Mean single sequence MFE -31.88
Consensus MFE -19.66
Energy contribution -19.54
Covariance contribution -0.12
Combinations/Pair 1.18
Mean z-score -1.82
Structure conservation index 0.62
SVM decision value 0.01
SVM RNA-class probability 0.539402
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18770719 110 - 27905053
UGCGGUGGGCGGCGAGAUAAGGGGGCGUGUACAUUGUUGCAUAAACAGUAAUGCCAGUUGCAGCGAAAUGCACUGAGAGAAAUAGCGGUCACA---GCCGUAACAUG--UA-CUAA
((((((.(((.((..........(((((....((((((.....)))))).)))))(((.(((......))))))..........)).)))...---)))))).....--..-.... ( -31.80)
>DroSec_CAF1 28972 105 - 1
-----UGGGCGGAGAGCAAAGGGGGCGUUCACAUUGUUGCAUAAACAGUAAUGGCAGUUGCAGCGAAAUGCACUGAGAGAAAUAUCGGUCACA---ACCGUAACAUG--UA-CUAA
-----...((((............(((((....((((((((....((....)).....)))))))))))))(((((.(....).)))))....---.))))......--..-.... ( -24.50)
>DroSim_CAF1 29685 105 - 1
-----UGGGUGGAGAGCAAAGGGGGCGUGCACAUUGUUGCAUAAACAGUAAUGGCAGUUGCAGCGAAAUGCACUGAGAGAAAUAUCAGUCACA---GCCCUAACAUG--UA-CUAA
-----.......((.(((...((((((((((..((((((((....((....)).....))))))))..)))))(((.(....).)))......---)))))....))--).-)).. ( -32.80)
>DroEre_CAF1 29297 110 - 1
-----UGGGCGGCGGGAAAGGGGGGCGUGCACAUUGUUGCAUAAACAGUAAUGGCAGUUGCAGCGAAAGGCACUGAGAGAAAUAUCAGCCUCACCUAGCAUAUGAUGCUUA-UCAA
-----((((((.((.(..((((((((((((...((((((((....((....)).....))))))))...))))(((.(....).)))))))).)))..)...)).))))))-.... ( -38.40)
>DroYak_CAF1 24241 108 - 1
-----UGGGCGGCGAGAGGAGGGGGCGUGCACAUUGUUGCACAAACAGUAAUGCCAGUUGCAGUGAGGUGCACUGAGAGAAAUGUCAGUCACA---AGCCUAAGAUACAUAAUGAA
-----(((((..(....).....(((((((((.(..((((((...((....))...).)))))..).))))))(((.(....).))))))...---.))))).............. ( -31.90)
>consensus
_____UGGGCGGCGAGAAAAGGGGGCGUGCACAUUGUUGCAUAAACAGUAAUGGCAGUUGCAGCGAAAUGCACUGAGAGAAAUAUCAGUCACA___ACCCUAACAUG__UA_CUAA
.......................((((((((..((((((((....((....)).....))))))))..)))))(((.(....).)))))).......................... (-19.66 = -19.54 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:04 2006